Gene detail

Detailed information of evm.model.Ap11.134.1.5f1685b0 in Astrangia poculata

Genomic Location: Ap11:1787027...1796292
NR annotation: CAH3152661.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.134.1.5f1685b0

atgacgttctttgctgttctgtcaagacctcaagacgtgttagattccgatgtcgcgcgcgtaaatacaagttcttttcatcgctccaaacagctgtttgcggcaatgtattggaaacatttactcgttggaggccttctccttcaactttttcaagaagtggactcattggatgtgttacaaaagtataatttgagcgatcaaatggcgatttgcaacgacaattcacgcgccgtggtttttatcggaagacggtcaagtagaaagtggattattttcttcgagagtggaggtctttgtacatcaaaagcggactgcaacgagcgatatttgaacaagaattcaacagtgttaatgacttcaagattactgcctgataaagtaatcggcagagatattttgtcttccgtagaaagcgaaaatccggcattcttcgattacaatcatgttcttgtaccttattgcagcagtgatttatggctcggatcaaagacaaagacaagccagaacgggtcgtttgattttacgaatgatccatccgtggataacttcagcttcaaaggtcagacaatttttcgttcagttttcgaggacttatttaagaaatacgatctgtctttagcggaagagattgcggtttcgggaagtagtgccggaggaattggaatcttgaaccatgccgaatggcttacatcacacaacttcactaaaacccaacgtttgacagccagaattcgatttattattgattcagcatggtttataaattttcaagatggctttaagtccagagttaaaccagaatttggcgaattagcaggcatttcttcgcctgcttgtgcagacatgtcgtatggatattcatgttgcctttctgtgtcatgtttgatttcgcgcggttacgttccccctcaaatacaaacagcctttgtttttagcctgtacgatatttatatgtttgcggacgtgcttaaaagactagaaaatgaaggaaaaacagcagaagatcatgtagcggattttttatccgttgttagcatgtatggtggcgcgatgaacgaatcgcttgaaatttctgacaagaatcacgcaagtttctttgttccggcttgttttcaacacacttatttcagcacgtcaagtctgtgggacgaagatggcattttaagtcctctgatagaggttactcgagacaatgggaagttcagtcatcaagtcaagagtggaacgtggacatcaacaaaaatcacacagggcgatactaacaccagtattcaagattttttatctaaatgggtcaagttgggcaacacgagttgcatcaagttgattgacagttgtattggtgctcattgtaatccaacctgccctgacaaactggttttcgtggatgcaggcgaggtctggcgcgacgttgttaagggggtcatcatcgcactgtctctagtgatcacccttatttgctttggattgaaagcaagcttcgtgttatattaccgttacttgatgaaaagtcagaaaaagtatttgaatgacagtgaaacttctcaggcaagaaaggagtggttcttaactcctgctgattgtaacactgaagactgcaggagcggctcggtttatcgtcttatcaaatgcttagatgtcatgataatttcttcttataattgcagatgttatctacctttgctgagaattgacgatgggtacagcaggccaccacttccactgtgtaagtctgatgaagctgtcagcattgcttgcctgtccttgacttacacggtagatgtgataaagaggaaaaagaagaaaactgacaatgatcccggctcggaggaaagcagcagggacagagacagtaaaacatcactgacagtgcgagattcaatcaccgaggaggactctggcagcgatctacaagaagatgaagaaaataaagaagacgaagcagatggcgtctggagtttacctcgcaggttgacaaatggctcgaacaaggatactgactcaactggaactccccaagaacaacaaacggactccgctatagcgagcatggacggccattctacttgggggtcacttgccggaagcgatatggcgctcttacacagtaaccatggtaacagagagcggtcagtgagttgccccgcgccagtctctatggatacaactgattcaacgaatgaaaagggtggcagttcgtccaaaaagcaaattcttaaaggtgtgtcggcgtacttcaacactggtgagctggtagcgatcatggggccatcgggatgtggtaaaacgacgctacttgatttgttaacggggagacggcggcacggggaatttaagggccaagtgtatatcaacggatttggtttgggtaaagttcaggactggtactctcgtaagattggttatgtattacagctcgctgtaccttactatgaagaacttactgttcgtcagaatctcttcttcgctgcacatatgaggttgcccaaggagacaagcgccgcagagaaatatgagcgtgttgaacaaattattgctgagactggtctgacgcaaatggccgacacagtgattggaggatcgacgggcctgggtttgagcggaggacaaaaacgtcgcctgtgtgttgctcttcagctgattaacatgccatctgttttatttctcgatgagccaacttcaggtcttgacgcatcctcatctctggagctgttaaatcatctgaatcttgtagctgagtcaggcagacttgttattctcaccattcatcagccgagactggaaatctttcatcttttccacaagattcttttcttgtgcgacggtcaggtggcgtactatggtgagccctccatggcgccagaaatattcatcaaagcttacgctcgggcaacttctgaagaatatcagctcagtgaagaagcaccgagaattgacgccaaaaatcccgcagacaccataatggatttgctaaactgcagtcaagctcgccgcgctattctggattattaccaagcaagtggcgagccacaggcagtccaggaagctatacagacgtcacaggaaagcgccagtaaaaccgttaccatggagagaatgagaaggatcgtggatggagctggatcgttcaacagaatctttgtgttggagagcagagctactgagaaacaaacacttggacaaatcttatatttccctttgatattttttacctttggacttatagtaggaactgtttattggcaagcagaggacaagaat

Transcript

evm.model.Ap11.134.1.5f1685b0

ATGACGTTCTTTGCTGTTCTGTCAAGACCTCAAGACGTGTTAGATTCCGATGTCGCGCGCGTAAATACAAGTTCTTTTCATCGCTCCAAACAGCTGTTTGCGGCAATGTATTGGAAACATTTACTCGTTGGAGGCCTTCTCCTTCAACTTTTTCAAGAAGTGGACTCATTGGATGTGTTACAAAAGTATAATTTGAGCGATCAAATGGCGATTTGCAACGACAATTCACGCGCCGTGGTTTTTATCGGAAGACGGTCAAGTAGAAAGTGGATTATTTTCTTCGAGAGTGGAGGTCTTTGTACATCAAAAGCGGACTGCAACGAGCGATATTTGAACAAGAATTCAACAGTGTTAATGACTTCAAGATTACTGCCTGATAAAGTAATCGGCAGAGATATTTTGTCTTCCGTAGAAAGCGAAAATCCGGCATTCTTCGATTACAATCATGTTCTTGTACCTTATTGCAGCAGTGATTTATGGCTCGGATCAAAGACAAAGACAAGCCAGAACGGGTCGTTTGATTTTACGAATGATCCATCCGTGGATAACTTCAGCTTCAAAGGTCAGACAATTTTTCGTTCAGTTTTCGAGGACTTATTTAAGAAATACGATCTGTCTTTAGCGGAAGAGATTGCGGTTTCGGGAAGTAGTGCCGGAGGAATTGGAATCTTGAACCATGCCGAATGGCTTACATCACACAACTTCACTAAAACCCAACGTTTGACAGCCAGAATTCGATTTATTATTGATTCAGCATGGTTTATAAATTTTCAAGATGGCTTTAAGTCCAGAGTTAAACCAGAATTTGGCGAATTAGCAGGCATTTCTTCGCCTGCTTGTGCAGACATGTCGTATGGATATTCATGTTGCCTTTCTGTGTCATGTTTGATTTCGCGCGGTTACGTTCCCCCTCAAATACAAACAGCCTTTGTTTTTAGCCTGTACGATATTTATATGTTTGCGGACGTGCTTAAAAGACTAGAAAATGAAGGAAAAACAGCAGAAGATCATGTAGCGGATTTTTTATCCGTTGTTAGCATGTATGGTGGCGCGATGAACGAATCGCTTGAAATTTCTGACAAGAATCACGCAAGTTTCTTTGTTCCGGCTTGTTTTCAACACACTTATTTCAGCACGTCAAGTCTGTGGGACGAAGATGGCATTTTAAGTCCTCTGATAGAGGTTACTCGAGACAATGGGAAGTTCAGTCATCAAGTCAAGAGTGGAACGTGGACATCAACAAAAATCACACAGGGCGATACTAACACCAGTATTCAAGATTTTTTATCTAAATGGGTCAAGTTGGGCAACACGAGTTGCATCAAGTTGATTGACAGTTGTATTGGTGCTCATTGTAATCCAACCTGCCCTGACAAACTGGTTTTCGTGGATGCAGGCGAGGTCTGGCGCGACGTTGTTAAGGGGGTCATCATCGCACTGTCTCTAGTGATCACCCTTATTTGCTTTGGATTGAAAGCAAGCTTCGTGTTATATTACCGTTACTTGATGAAAAGTCAGAAAAAGTATTTGAATGACAGTGAAACTTCTCAGGCAAGAAAGGAGTGGTTCTTAACTCCTGCTGATTGTAACACTGAAGACTGCAGGAGCGGCTCGGTTTATCGTCTTATCAAATGCTTAGATGTCATGATAATTTCTTCTTATAATTGCAGATGTTATCTACCTTTGCTGAGAATTGACGATGGGTACAGCAGGCCACCACTTCCACTGTGTAAGTCTGATGAAGCTGTCAGCATTGCTTGCCTGTCCTTGACTTACACGGTAGATGTGATAAAGAGGAAAAAGAAGAAAACTGACAATGATCCCGGCTCGGAGGAAAGCAGCAGGGACAGAGACAGTAAAACATCACTGACAGTGCGAGATTCAATCACCGAGGAGGACTCTGGCAGCGATCTACAAGAAGATGAAGAAAATAAAGAAGACGAAGCAGATGGCGTCTGGAGTTTACCTCGCAGGTTGACAAATGGCTCGAACAAGGATACTGACTCAACTGGAACTCCCCAAGAACAACAAACGGACTCCGCTATAGCGAGCATGGACGGCCATTCTACTTGGGGGTCACTTGCCGGAAGCGATATGGCGCTCTTACACAGTAACCATGGTAACAGAGAGCGGTCAGTGAGTTGCCCCGCGCCAGTCTCTATGGATACAACTGATTCAACGAATGAAAAGGGTGGCAGTTCGTCCAAAAAGCAAATTCTTAAAGGTGTGTCGGCGTACTTCAACACTGGTGAGCTGGTAGCGATCATGGGGCCATCGGGATGTGGTAAAACGACGCTACTTGATTTGTTAACGGGGAGACGGCGGCACGGGGAATTTAAGGGCCAAGTGTATATCAACGGATTTGGTTTGGGTAAAGTTCAGGACTGGTACTCTCGTAAGATTGGTTATGTATTACAGCTCGCTGTACCTTACTATGAAGAACTTACTGTTCGTCAGAATCTCTTCTTCGCTGCACATATGAGGTTGCCCAAGGAGACAAGCGCCGCAGAGAAATATGAGCGTGTTGAACAAATTATTGCTGAGACTGGTCTGACGCAAATGGCCGACACAGTGATTGGAGGATCGACGGGCCTGGGTTTGAGCGGAGGACAAAAACGTCGCCTGTGTGTTGCTCTTCAGCTGATTAACATGCCATCTGTTTTATTTCTCGATGAGCCAACTTCAGGTCTTGACGCATCCTCATCTCTGGAGCTGTTAAATCATCTGAATCTTGTAGCTGAGTCAGGCAGACTTGTTATTCTCACCATTCATCAGCCGAGACTGGAAATCTTTCATCTTTTCCACAAGATTCTTTTCTTGTGCGACGGTCAGGTGGCGTACTATGGTGAGCCCTCCATGGCGCCAGAAATATTCATCAAAGCTTACGCTCGGGCAACTTCTGAAGAATATCAGCTCAGTGAAGAAGCACCGAGAATTGACGCCAAAAATCCCGCAGACACCATAATGGATTTGCTAAACTGCAGTCAAGCTCGCCGCGCTATTCTGGATTATTACCAAGCAAGTGGCGAGCCACAGGCAGTCCAGGAAGCTATACAGACGTCACAGGAAAGCGCCAGTAAAACCGTTACCATGGAGAGAATGAGAAGGATCGTGGATGGAGCTGGATCGTTCAACAGAATCTTTGTGTTGGAGAGCAGAGCTACTGAGAAACAAACACTTGGACAAATCTTATATTTCCCTTTGATATTTTTTACCTTTGGACTTATAGTAGGAACTGTTTATTGGCAAGCAGAGGACAAGAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q55DW4	ABC transporter G family member 1 OS=Dictyostelium discoideum OX=44689 GN=abcG1 PE=3 SV=1
Q9FNB5	ABC transporter G family member 6 OS=Arabidopsis thaliana OX=3702 GN=ABCG6 PE=2 SV=1
Q93YS4	ABC transporter G family member 22 OS=Arabidopsis thaliana OX=3702 GN=ABCG22 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001588 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03283 all species →	PAE	Pectinacetylesterase	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004963 all species →	Family	Pectinacetylesterase/NOTUM	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR050352 all species →	Family	ATP-binding cassette subfamily G transporters	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48041 all species →	ABC TRANSPORTER G FAMILY MEMBER 28	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap11.134.1.5f1685b0.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.