Gene detail

Detailed information of evm.model.Ap11.1366 in Astrangia poculata

Genomic Location: Ap11:14922650...14940471
NR annotation: XP_020615249.1, eIF-2-alpha kinase GCN2-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.1366

atggttcttcaactagcacatcatgttcaaacatgtcttcacaaacacaacaaaccacagttgtcgttttatgacaagatgatggcaaacaagcgtaaagaggaggaaagaatcctcgccgcagagcagcagaaactgcaacaggaaattgaagctaacaaggaaagagaggaaaatgagaaacgtgaaatagaagaagaattgcaaaggagaggagaagccatgaaggaaagcagaagacgaaggactgttgttattccagaaaagaactctaagacagatccagtcacccagagttcaaaaacacgagatgctgattcgagcctagcaaaagaaattcccattcagagaaaacaatcaggaagttctcttacatcaatgcaaccatcctcacccaagaaaacagatggaatgccctctgggtacagcatcatgagacggcgaaggagttctgaaggcttgggtgatgaatctttcacagggacgagagtaataaacttcagcagcagaggagagcatgtggtgcattgtgggaaatgtctaggtcagggctcgtcaggttcaagggtttacagtgccatggacatcactattggtgatttagttgtggtttgtgaatggactttgactccacatcaaggaggtgccagacgcacactgagcatcactgagaaccagcaccaagacttgcaaggaagactcatgaaacaggtttccagtattgagcaggagattctgtccctgattaaccgagtcagtcatccaaatctcactcattacttagctgtcaatgtcaaggaagtgacccccaccattcaagttcaggttttggcagaatacgttggcggtggagatctgggtctacatttgagaagtggagggctgccgttagctcagctacgagaatacacacatcagcttgtggaagccctgtgctatcttcatggcaaagctgtggtccataaagatttgaggttgacaagttgccgtcttgactctgatggtaatttaaggctcgctgactacagtgtggggaaaaggctgtctgatttgtaccaagtgtatggtggtaacgagaaagatacgcagaataacacgactgaagagaacaacaagacaagttcacgttatgggaaaactggcgacatttacagtttgggtatacttgtgctttctttggctcttggagaaataatcactggagacgtgaaggaaataccgacttctttaccatcagaactacgcgatttcctttcaaagaataagtttttagaatataacatgattctcagccaatcagaaaaacaggtcggcatcatccatcgagatctcaagcccgtaaacctgttcctagattctcgcggccgtatcaagattggcgacttcggccttgcaacgacgcacggcataacgcgaggaggcatgggccccgatgccccggattcaaatgagaagacacagtctcccaagagcagctccaccaccaaagaaagcatgacgggtaaagttaaagcgtgtatgtctcccgagctgggtaaccgaccagggggaggaagtaaaaccagaaagttgatctgtatagcgggaaatttcttttttgagatgtgttacaagccgctaaccacttccatggagagagttaaagttttaggaaacctacgaacggaaagaatcattttcccggaagagtttgaccacaagaccctcgccaaggaaactattgtcctcaaatggctcctaaaacacaatcctgaggaacgccctacgtcacaagaacttctccaaagtcaatatatcccgcccaagatcgaagatggtcagttggacgaagtgcttaaacacacgctcgcctctaccaactccacccgctatcagcggctgatgaaagccatgttctcccaacatgtgtcttcagttaaagacgtcacttatgacattgacgtctacgcggggctctcgcaggtcatgccacgcgcgatcctcgcgcagcaaatggtccacgagaacgtaaaatccgtttttctgcggcacggcgcgctgcggttgagaacgtcgctactagcgcctcgcactaagttatttgaacagctagagctcgcggttagcgttatggatcacagcggcacgcttgtcacgcttccgtttgatctacggataccgttcgcgcgttatatcgcgcgaaacagcattgtgcacatgaagaggtttgacattggatgcgtgtaccgtgataagaagattctcggctcgcatcctaaagagttgtatgaatgcgtctttgacattgtgacaagcacgcctgagaatcttgtcccagacgccgaggtgctgctatcggtagccgagataatcaaggagtttccttcgctggtctcgcgcagttactacatcaggataaatcatgcttctctcatgaagtgttatttgacgtccgttggcatctcggacgagagacagacggaattgttggcgattcttcaagaaattcgcagcgaaaaagaccgaaatgtgcaaatccatgcgttcgttgagagcttgcagctaagcgaccacacagctacggctctgtgtgagtttctggagttcgaaggccccgtgaacaaattgcgagagcatctaatcggcacaatgaagcgaaaatcttgggtcgggcaagctgcacggcagtcatatcacgatctagaagcgatcacattgcacgcggaaacgtttggaatcggtttacccgtggttgtgaacacttccatggtttataactttaatcatttctctggattgattttccagtttgtcgctgcaaacaaacggaagcggaaacgcggtggcgttgatattctggccgccgggggacgatacgacaagctgatgaatcacttccggcgaggagtagaagctgctcacccctcccatggagcggtgggtgttagtatcgccattgagaaaatagtcgcggctgttttggaagaagctgatgatacaattcccagcgccttcgatgtcttcgtgtgttcagccggacacaacccaatgttggcagaacgcatgcgcatcgcgcgtgagttgtggaaggctgggatcaaggcgaccatttcttatgattcaaaggacttgactcctctggaagaactgcaggagttttgtaaacaaggtggaattcagcatatggtggttttgaaggagcaggaaactggcagtgtcagggtccgttctttggacaaagaaaagatctccgagtctcgagtccaaattaaggacctcgtggaccatcttcaagggaagctctctacgaagcctgaacccaccgagtcctctgcgccccttggtaacaaaggcgcagggacacagagcggtaacgagccaacgtccacatttgtaccagaaatgaaagtctcgttcaacacacaggaaaagatggcctggaacacaaaaaggagatacgagagctcaatgatttcaaagattaaacctctgttgactgatatcagttccaagaatgctgtggaagtgatcggggttgacttgccaggttctgttatacgcaacatggcagcgatccttgatctgaattctaatgaagatgcctttgacgcgagtgtagcaaccattgctgacaaaaaccctcgctacaagaaatacctcggacgtgtttgcgacgacattagggagttgaaagtctccgggaaagtacaagtcgtttttgtgtacagcgtgaaagacgaaatgtttaaaatatttttctaa

Transcript

evm.model.Ap11.1366

ATGGTTCTTCAACTAGCACATCATGTTCAAACATGTCTTCACAAACACAACAAACCACAGTTGTCGTTTTATGACAAGATGATGGCAAACAAGCGTAAAGAGGAGGAAAGAATCCTCGCCGCAGAGCAGCAGAAACTGCAACAGGAAATTGAAGCTAACAAGGAAAGAGAGGAAAATGAGAAACGTGAAATAGAAGAAGAATTGCAAAGGAGAGGAGAAGCCATGAAGGAAAGCAGAAGACGAAGGACTGTTGTTATTCCAGAAAAGAACTCTAAGACAGATCCAGTCACCCAGAGTTCAAAAACACGAGATGCTGATTCGAGCCTAGCAAAAGAAATTCCCATTCAGAGAAAACAATCAGGAAGTTCTCTTACATCAATGCAACCATCCTCACCCAAGAAAACAGATGGAATGCCCTCTGGGTACAGCATCATGAGACGGCGAAGGAGTTCTGAAGGCTTGGGTGATGAATCTTTCACAGGGACGAGAGTAATAAACTTCAGCAGCAGAGGAGAGCATGTGGTGCATTGTGGGAAATGTCTAGGTCAGGGCTCGTCAGGTTCAAGGGTTTACAGTGCCATGGACATCACTATTGGTGATTTAGTTGTGGTTTGTGAATGGACTTTGACTCCACATCAAGGAGGTGCCAGACGCACACTGAGCATCACTGAGAACCAGCACCAAGACTTGCAAGGAAGACTCATGAAACAGGTTTCCAGTATTGAGCAGGAGATTCTGTCCCTGATTAACCGAGTCAGTCATCCAAATCTCACTCATTACTTAGCTGTCAATGTCAAGGAAGTGACCCCCACCATTCAAGTTCAGGTTTTGGCAGAATACGTTGGCGGTGGAGATCTGGGTCTACATTTGAGAAGTGGAGGGCTGCCGTTAGCTCAGCTACGAGAATACACACATCAGCTTGTGGAAGCCCTGTGCTATCTTCATGGCAAAGCTGTGGTCCATAAAGATTTGAGGTTGACAAGTTGCCGTCTTGACTCTGATGGTAATTTAAGGCTCGCTGACTACAGTGTGGGGAAAAGGCTGTCTGATTTGTACCAAGTGTATGGTGGTAACGAGAAAGATACGCAGAATAACACGACTGAAGAGAACAACAAGACAAGTTCACGTTATGGGAAAACTGGCGACATTTACAGTTTGGGTATACTTGTGCTTTCTTTGGCTCTTGGAGAAATAATCACTGGAGACGTGAAGGAAATACCGACTTCTTTACCATCAGAACTACGCGATTTCCTTTCAAAGAATAAGTTTTTAGAATATAACATGATTCTCAGCCAATCAGAAAAACAGGTCGGCATCATCCATCGAGATCTCAAGCCCGTAAACCTGTTCCTAGATTCTCGCGGCCGTATCAAGATTGGCGACTTCGGCCTTGCAACGACGCACGGCATAACGCGAGGAGGCATGGGCCCCGATGCCCCGGATTCAAATGAGAAGACACAGTCTCCCAAGAGCAGCTCCACCACCAAAGAAAGCATGACGGGTAAAGTTAAAGCGTGTATGTCTCCCGAGCTGGGTAACCGACCAGGGGGAGGAAGTAAAACCAGAAAGTTGATCTGTATAGCGGGAAATTTCTTTTTTGAGATGTGTTACAAGCCGCTAACCACTTCCATGGAGAGAGTTAAAGTTTTAGGAAACCTACGAACGGAAAGAATCATTTTCCCGGAAGAGTTTGACCACAAGACCCTCGCCAAGGAAACTATTGTCCTCAAATGGCTCCTAAAACACAATCCTGAGGAACGCCCTACGTCACAAGAACTTCTCCAAAGTCAATATATCCCGCCCAAGATCGAAGATGGTCAGTTGGACGAAGTGCTTAAACACACGCTCGCCTCTACCAACTCCACCCGCTATCAGCGGCTGATGAAAGCCATGTTCTCCCAACATGTGTCTTCAGTTAAAGACGTCACTTATGACATTGACGTCTACGCGGGGCTCTCGCAGGTCATGCCACGCGCGATCCTCGCGCAGCAAATGGTCCACGAGAACGTAAAATCCGTTTTTCTGCGGCACGGCGCGCTGCGGTTGAGAACGTCGCTACTAGCGCCTCGCACTAAGTTATTTGAACAGCTAGAGCTCGCGGTTAGCGTTATGGATCACAGCGGCACGCTTGTCACGCTTCCGTTTGATCTACGGATACCGTTCGCGCGTTATATCGCGCGAAACAGCATTGTGCACATGAAGAGGTTTGACATTGGATGCGTGTACCGTGATAAGAAGATTCTCGGCTCGCATCCTAAAGAGTTGTATGAATGCGTCTTTGACATTGTGACAAGCACGCCTGAGAATCTTGTCCCAGACGCCGAGGTGCTGCTATCGGTAGCCGAGATAATCAAGGAGTTTCCTTCGCTGGTCTCGCGCAGTTACTACATCAGGATAAATCATGCTTCTCTCATGAAGTGTTATTTGACGTCCGTTGGCATCTCGGACGAGAGACAGACGGAATTGTTGGCGATTCTTCAAGAAATTCGCAGCGAAAAAGACCGAAATGTGCAAATCCATGCGTTCGTTGAGAGCTTGCAGCTAAGCGACCACACAGCTACGGCTCTGTGTGAGTTTCTGGAGTTCGAAGGCCCCGTGAACAAATTGCGAGAGCATCTAATCGGCACAATGAAGCGAAAATCTTGGGTCGGGCAAGCTGCACGGCAGTCATATCACGATCTAGAAGCGATCACATTGCACGCGGAAACGTTTGGAATCGGTTTACCCGTGGTTGTGAACACTTCCATGGTTTATAACTTTAATCATTTCTCTGGATTGATTTTCCAGTTTGTCGCTGCAAACAAACGGAAGCGGAAACGCGGTGGCGTTGATATTCTGGCCGCCGGGGGACGATACGACAAGCTGATGAATCACTTCCGGCGAGGAGTAGAAGCTGCTCACCCCTCCCATGGAGCGGTGGGTGTTAGTATCGCCATTGAGAAAATAGTCGCGGCTGTTTTGGAAGAAGCTGATGATACAATTCCCAGCGCCTTCGATGTCTTCGTGTGTTCAGCCGGACACAACCCAATGTTGGCAGAACGCATGCGCATCGCGCGTGAGTTGTGGAAGGCTGGGATCAAGGCGACCATTTCTTATGATTCAAAGGACTTGACTCCTCTGGAAGAACTGCAGGAGTTTTGTAAACAAGGTGGAATTCAGCATATGGTGGTTTTGAAGGAGCAGGAAACTGGCAGTGTCAGGGTCCGTTCTTTGGACAAAGAAAAGATCTCCGAGTCTCGAGTCCAAATTAAGGACCTCGTGGACCATCTTCAAGGGAAGCTCTCTACGAAGCCTGAACCCACCGAGTCCTCTGCGCCCCTTGGTAACAAAGGCGCAGGGACACAGAGCGGTAACGAGCCAACGTCCACATTTGTACCAGAAATGAAAGTCTCGTTCAACACACAGGAAAAGATGGCCTGGAACACAAAAAGGAGATACGAGAGCTCAATGATTTCAAAGATTAAACCTCTGTTGACTGATATCAGTTCCAAGAATGCTGTGGAAGTGATCGGGGTTGACTTGCCAGGTTCTGTTATACGCAACATGGCAGCGATCCTTGATCTGAATTCTAATGAAGATGCCTTTGACGCGAGTGTAGCAACCATTGCTGACAAAAACCCTCGCTACAAGAAATACCTCGGACGTGTTTGCGACGACATTAGGGAGTTGAAAGTCTCCGGGAAAGTACAAGTCGTTTTTGTGTACAGCGTGAAAGACGAAATGTTTAAAATATTTTTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P2K8	eIF-2-alpha kinase GCN2 OS=Homo sapiens OX=9606 GN=EIF2AK4 PE=1 SV=3
Q9QZ05	eIF-2-alpha kinase GCN2 OS=Mus musculus OX=10090 GN=Eif2ak4 PE=1 SV=2
D4A7V9	eIF-2-alpha kinase GCN2 OS=Rattus norvegicus OX=10116 GN=Eif2ak4 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002825 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF13393 all species →	tRNA-synt_His	Histidyl-tRNA synthetase	Domain	Interproscan
PF12745 all species →	HGTP_anticodon2	Anticodon binding domain of tRNAs	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR041715 all species →	Domain	Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036621 all species →	Homologous_superfamily	Anticodon-binding domain superfamily	Interproscan
IPR024435 all species →	Domain	Histidyl tRNA synthetase-related domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11476 all species →	HISTIDYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004821 all species →	Molecular Function	histidine-tRNA ligase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006427 all species →	Biological Process	histidyl-tRNA aminoacylation	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap11.1366.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.