Gene detail

Detailed information of evm.model.Ap11.137 in Astrangia poculata

Genomic Location: Ap11:1833854...1856033
NR annotation: CAH3152654.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.137

atgttttgtttgtggtgttgtgagtttggtaacctgtcaaatgcttcgtcttcctttgttactggaggagtgttctatggagctatgagggaggcattccaaagcaaagtgcaacatccaagaaaggcaatgtcactgtttctcaaagcaggaaaaggtcttgtacttactggtaatgatgaagccgccttggaatgttttgaatctctgattcacttggctaaggaacaacttaatcgtgtatttgccgaaaaatcaacattacctccattatcacctgacgaaagggcagaaatgtatcacaggaagtcactaaaaagacaagattccataagggaagaaacagagcaagaagtacaagaaagtgaaggccagagtacacaaggttccgaaagaacatcattaataaatggttacagtgataaagcaccggaaaatgttacagtaatatcaattgacagcgatccgttatcagactcgaaaacaaatacagttgttgaggaacagagtgaggttgtccaagtttgtgatgctacagacatgtttgtagtacaagaagaatcgacaacattctattctgctgaaactgttgtcgaaaggcactctgtggcttcttctgagagctccatgtctgatgacgcaggtgttggagtccctgtgtcattgagtgaaacaaatgtacaagattgttcagaaggctcagtgtcctgtgcagcagagctagcgcaagacgacatgcagatgtgtgtcatagaatgtgtggaatctgtggaagaggattttgaagttgctacatgtacattagattacgatgattctgtgagtgtttgcagtcttggaagtacagaagagaatattgtacagactcatgacatagtaatggagtgcggagagcaaatcgttgaagaagttcctatgagcccgcaagcaaaggcacttgttagaagagggtatgttgttaatgaactgatggatacagagcaaagttacattcaagatcttggttatgttgtcaagggttacatcccagaattttcttcatgcaaccttcccatagaattgaaaaataaagaaaaagaagtattctccaacatagaagatatttatgaatggcattcaagagaattttacaatgatctcaagtattgtgaagatgaacctgagaagattggtgaagtttttgcacaatcggagcagcaacttgaagagctgtattcagagtactgcaggaacaagacgaaatctgacttgttagttcagaaatatgccgacaccttcttccaaggctgcaaagagaagctgggtcacaggcttcaactcgcggattatcttatcaagcctgttcagaggataactaaatatcaacttctgctcaaggacattctgaagcatactgaaaaagcaggagaagattgcactgaactacagagagcactagatgttgcacttagaattctcaagcgcacaaatgacatggtgaacgtggggatgcttcaagggtttgaggtgaaacctgaggaaacaggagaccttgtactgcaggacgagtttgaagttgttgatggtaaagccaagacaaaaccgaaagagagaagagtgttcttgttcgagaaaactattatattcagcgaaccaatgacaagagaaggtggacttccagaattcagatttgtgcataatatgaagactaaaggtatcggccagacagagtcggtagacagtgatccttgtaaatgggcggtttggttcagaaaactgggaggtgctgagatttatctgctgaaggcgtcttcacctgaaacgaaggagctttggatcaaggctataaaggaatgtcacgacaagaaaagacctggattgcttaaagcctggtataagtacagagggcgcaattcagagtccgaaaaggatcatgacgactccgctgatgggggactcctcaggatccgtacacaaaggccacatggcggatcacgccgtacaacagtcaaacgaaagtcgtccaaaggctctaagactggtaaaagaaaagaccgacaggaaggtgagttgagtgccgcagagagactgagggaaaacataaggaaatttcgaacagaagagagattgttagcggtggatccatcttctattggcgacgagtgcgaaggtcttatacaaggaaattcattggaagaatcagtcgtgccccagtcccccactgtagagatgaacacggggttgaaagtggccgagctgtcgtctgcggagcgttggctcaagttggagattgaggaaaaccagctaaacaagcttttacatttgaccaggatgatcgccgcgcgactgtttcaaatgcgagactgtgagcgggccctggaactatacagtgacgtcattgccacgatactgtctctggaggaattaaggaaactcgaaggattgtttgctgcaagggacctgttacttagtaaaagcgtggaagtttatgaaggatacagaaaggaacatttaaatgccagttttgacgtggaagattcttataattcgctggctaatcttctcaatgaaacagctggattttccagtatcagtaaaggcaccacgtggtctattgtcctgtacagcataacagctgcagcggcttctagagagcagcactggcgcgaggcttcacaagcgttttaccgcgtgtctatggtgtacagcaacatgcaggccaccgcaaatgcagttgatagcttactagatgcacactggatgtgttgccaagcagaggattatctcactgctctacagtttctttataacggatttattcgagcgctggctgcgaaagacttgatgagatgccttcgacttgaacaacaagcgttgcacttggtggacaagataaagtcacttggcgctagggtccacgtaatggtgagtgacgagggggaactggacgccagacaacaagtcagcactcatcatgtggagttcctggtcaatatgagtcgagctactagacgaagggactgggcctggtttgaaatcgcagaaactgaactacaaaaattctgctctggtcaccaggccgacgcggtccttcaggctgtgtttctcaagattaagaaatccttaccaggcccatcagagtgctaa

Transcript

evm.model.Ap11.137

ATGTTTTGTTTGTGGTGTTGTGAGTTTGGTAACCTGTCAAATGCTTCGTCTTCCTTTGTTACTGGAGGAGTGTTCTATGGAGCTATGAGGGAGGCATTCCAAAGCAAAGTGCAACATCCAAGAAAGGCAATGTCACTGTTTCTCAAAGCAGGAAAAGGTCTTGTACTTACTGGTAATGATGAAGCCGCCTTGGAATGTTTTGAATCTCTGATTCACTTGGCTAAGGAACAACTTAATCGTGTATTTGCCGAAAAATCAACATTACCTCCATTATCACCTGACGAAAGGGCAGAAATGTATCACAGGAAGTCACTAAAAAGACAAGATTCCATAAGGGAAGAAACAGAGCAAGAAGTACAAGAAAGTGAAGGCCAGAGTACACAAGGTTCCGAAAGAACATCATTAATAAATGGTTACAGTGATAAAGCACCGGAAAATGTTACAGTAATATCAATTGACAGCGATCCGTTATCAGACTCGAAAACAAATACAGTTGTTGAGGAACAGAGTGAGGTTGTCCAAGTTTGTGATGCTACAGACATGTTTGTAGTACAAGAAGAATCGACAACATTCTATTCTGCTGAAACTGTTGTCGAAAGGCACTCTGTGGCTTCTTCTGAGAGCTCCATGTCTGATGACGCAGGTGTTGGAGTCCCTGTGTCATTGAGTGAAACAAATGTACAAGATTGTTCAGAAGGCTCAGTGTCCTGTGCAGCAGAGCTAGCGCAAGACGACATGCAGATGTGTGTCATAGAATGTGTGGAATCTGTGGAAGAGGATTTTGAAGTTGCTACATGTACATTAGATTACGATGATTCTGTGAGTGTTTGCAGTCTTGGAAGTACAGAAGAGAATATTGTACAGACTCATGACATAGTAATGGAGTGCGGAGAGCAAATCGTTGAAGAAGTTCCTATGAGCCCGCAAGCAAAGGCACTTGTTAGAAGAGGGTATGTTGTTAATGAACTGATGGATACAGAGCAAAGTTACATTCAAGATCTTGGTTATGTTGTCAAGGGTTACATCCCAGAATTTTCTTCATGCAACCTTCCCATAGAATTGAAAAATAAAGAAAAAGAAGTATTCTCCAACATAGAAGATATTTATGAATGGCATTCAAGAGAATTTTACAATGATCTCAAGTATTGTGAAGATGAACCTGAGAAGATTGGTGAAGTTTTTGCACAATCGGAGCAGCAACTTGAAGAGCTGTATTCAGAGTACTGCAGGAACAAGACGAAATCTGACTTGTTAGTTCAGAAATATGCCGACACCTTCTTCCAAGGCTGCAAAGAGAAGCTGGGTCACAGGCTTCAACTCGCGGATTATCTTATCAAGCCTGTTCAGAGGATAACTAAATATCAACTTCTGCTCAAGGACATTCTGAAGCATACTGAAAAAGCAGGAGAAGATTGCACTGAACTACAGAGAGCACTAGATGTTGCACTTAGAATTCTCAAGCGCACAAATGACATGGTGAACGTGGGGATGCTTCAAGGGTTTGAGGTGAAACCTGAGGAAACAGGAGACCTTGTACTGCAGGACGAGTTTGAAGTTGTTGATGGTAAAGCCAAGACAAAACCGAAAGAGAGAAGAGTGTTCTTGTTCGAGAAAACTATTATATTCAGCGAACCAATGACAAGAGAAGGTGGACTTCCAGAATTCAGATTTGTGCATAATATGAAGACTAAAGGTATCGGCCAGACAGAGTCGGTAGACAGTGATCCTTGTAAATGGGCGGTTTGGTTCAGAAAACTGGGAGGTGCTGAGATTTATCTGCTGAAGGCGTCTTCACCTGAAACGAAGGAGCTTTGGATCAAGGCTATAAAGGAATGTCACGACAAGAAAAGACCTGGATTGCTTAAAGCCTGGTATAAGTACAGAGGGCGCAATTCAGAGTCCGAAAAGGATCATGACGACTCCGCTGATGGGGGACTCCTCAGGATCCGTACACAAAGGCCACATGGCGGATCACGCCGTACAACAGTCAAACGAAAGTCGTCCAAAGGCTCTAAGACTGGTAAAAGAAAAGACCGACAGGAAGGTGAGTTGAGTGCCGCAGAGAGACTGAGGGAAAACATAAGGAAATTTCGAACAGAAGAGAGATTGTTAGCGGTGGATCCATCTTCTATTGGCGACGAGTGCGAAGGTCTTATACAAGGAAATTCATTGGAAGAATCAGTCGTGCCCCAGTCCCCCACTGTAGAGATGAACACGGGGTTGAAAGTGGCCGAGCTGTCGTCTGCGGAGCGTTGGCTCAAGTTGGAGATTGAGGAAAACCAGCTAAACAAGCTTTTACATTTGACCAGGATGATCGCCGCGCGACTGTTTCAAATGCGAGACTGTGAGCGGGCCCTGGAACTATACAGTGACGTCATTGCCACGATACTGTCTCTGGAGGAATTAAGGAAACTCGAAGGATTGTTTGCTGCAAGGGACCTGTTACTTAGTAAAAGCGTGGAAGTTTATGAAGGATACAGAAAGGAACATTTAAATGCCAGTTTTGACGTGGAAGATTCTTATAATTCGCTGGCTAATCTTCTCAATGAAACAGCTGGATTTTCCAGTATCAGTAAAGGCACCACGTGGTCTATTGTCCTGTACAGCATAACAGCTGCAGCGGCTTCTAGAGAGCAGCACTGGCGCGAGGCTTCACAAGCGTTTTACCGCGTGTCTATGGTGTACAGCAACATGCAGGCCACCGCAAATGCAGTTGATAGCTTACTAGATGCACACTGGATGTGTTGCCAAGCAGAGGATTATCTCACTGCTCTACAGTTTCTTTATAACGGATTTATTCGAGCGCTGGCTGCGAAAGACTTGATGAGATGCCTTCGACTTGAACAACAAGCGTTGCACTTGGTGGACAAGATAAAGTCACTTGGCGCTAGGGTCCACGTAATGGTGAGTGACGAGGGGGAACTGGACGCCAGACAACAAGTCAGCACTCATCATGTGGAGTTCCTGGTCAATATGAGTCGAGCTACTAGACGAAGGGACTGGGCCTGGTTTGAAATCGCAGAAACTGAACTACAAAAATTCTGCTCTGGTCACCAGGCCGACGCGGTCCTTCAGGCTGTGTTTCTCAAGATTAAGAAATCCTTACCAGGCCCATCAGAGTGCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75962	Triple functional domain protein OS=Homo sapiens OX=9606 GN=TRIO PE=1 SV=2
F1M0Z1	Triple functional domain protein OS=Rattus norvegicus OX=10116 GN=Trio PE=1 SV=4
Q0KL02	Triple functional domain protein OS=Mus musculus OX=10090 GN=Trio PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005526 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR051336 all species →	Family	Rho GTPase-activating Guanine Nucleotide Exchange Factors	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR001331 all species →	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22826 all species →	RHO GUANINE EXCHANGE FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019898 all species →	Cellular Component	extrinsic component of membrane	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap11.137.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.