Detailed information of evm.model.Ap11.1415 in Astrangia poculata

Genomic Location: Ap11:15340520...15365610
NR annotation: XP_020632202.1, WD repeat and HMG-box DNA-binding protein 1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O13046WD repeat and HMG-box DNA-binding protein 1 OS=Xenopus laevis OX=8355 GN=wdhd1 PE=1 SV=1
O75717WD repeat and HMG-box DNA-binding protein 1 OS=Homo sapiens OX=9606 GN=WDHD1 PE=1 SV=1
P59328WD repeat and HMG-box DNA-binding protein 1 OS=Mus musculus OX=10090 GN=Wdhd1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003464 (this species only)
Transcription factor familyHMG · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12341
all species →		Mcl1_midMinichromosome loss protein, Mcl1, middle regionRepeatInterproscan
PF20946
all species →		Ctf4_CDNA polymerase alpha-binding protein Ctf4, C-terminal domainDomainInterproscan
PF00505
all species →		HMG_boxHMG (high mobility group) boxDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009071
all species →		DomainHigh mobility group box domainInterproscan
IPR036910
all species →		Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR022100
all species →		DomainMinichromosome loss protein Mcl1, middle regionInterproscan
IPR048591
all species →		DomainDNA polymerase alpha-binding protein Ctf4-like, C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19932
all species →		WD REPEAT AND HMG-BOX DNA BINDING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000278
all species →		Biological Processmitotic cell cycleInterproscan
GO:0003682
all species →		Molecular Functionchromatin bindingInterproscan
GO:0006261
all species →		Biological ProcessDNA-templated DNA replicationInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0043596
all species →		Cellular Componentnuclear replication forkInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap11.1415.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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