Gene detail

Detailed information of evm.model.Ap11.1443 in Astrangia poculata

Genomic Location: Ap11:15808157...15818774
NR annotation: KAJ7390619.1, Islet cell autoantigen 1 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.1443

atgaacagttcttatcagcaagtgtcgcaagaccctgatgaaagtgatgaacgtcacagatcttaccaaccgtaccaagatgacgatgaaggctatgaaggaaactacggttataactatggctacaatccgtatcgacctccagctgggggaatcaaaggaaaagtggagcagaaatactggcatacaaagcaaacagtgatccaaaagttgggaaaggaacaagactgttatgtcgtggcaggagactctgaagttgatgcgcgccttgaggcttttagacatatacagaagacatgtatagatattctgaaggctgtagaagtctatcaaaatagaatatttgctttgtctcaggatgagaatgaaatgggacgctttcttcgagaacaaggttcccaggataaatccaaagctggaaagatgatgattgctgtcggcaaggctcagagttactctgctcaacaaagattgagccttagaactccacttgtaagactgtatcaagaggttgaaacgttccggtaccgtgccatctccgacacattccagactgttaatcgcatggaacagtctagaacagactacagagctgggctcttgtggatggctaatatatctaaagaattggatcctgaagaatataagagattagacaaatttagagaggttcaaggtcaagttcggaaaggtaaaaagaaatttgacaagctgaaagttgatgttatgcagaagatagatcttctgtctgcgagtagatgtaacttactttcaagcacccttgctgcataccagcaggctctgctcaagttttgggagaacacttcacgaactatgactcaagtatcagaacagtttaaaggattaccgacgtatcagtttcaaatgttaaaaagcctgaatcctctaactctcgacggaaatgacaaggaaaaggatgaggaagggaaagaagcaaaaccagacaaagagtctgacgaagacaaaaaggaagtgacgaatggcaatgaaaagaaggaagcttctaaagatgatgatgatgatcagcttatatcattagatcattcaccattagaggagaagaattcagccgcaggggcaagtaagaagactgatgaggatgacgatgatgatgcgcttttagaaacagatttacttggggatgacgaagtgtccaatggaaatgtagaaaagaatgaaaagccaagtgcttttattgatttgttgggtgacgatgatttgatgccaccaaaacatcaatcaactacagatgatcttctttcatcatttgagagtcctccaagcagcaatggcctcaagagtcatggttcattcatgccaccaagctatgaggcagccaagcaaattccagcatcaggttcaggaagtgagaacacttcatcaatgacagctgatgacctgctgtttggctcccccaccagggaggagagaggaacagaaagcaagtcagatctggatatcttaaacgagatccttggctctaatggtgcttcttccatgcaaggtgcagaaaatgataacagcttcagcaagacatggaaggacatgtttggtgatgagccgcttgagaccactcaaccgacacaggagccgaatcagtcttggtcccagggaggtgccaattttatgatgccatctgacctccttaacagcatggccaagtttgacccatttacagaggttcccccaggtgtcccacctcaacaaggcatgggcatgccttcaaagtcattaggtctggtcaatcccccacaggctccgacaggcaagcgcacaaataatcttcctcaatcacagtcaaaacaggcaccagtgctccctggaaaggggaacgagaaggggaaaggtaaagggaaaaaaggccaagacatgtcagcttggttcagtctgttttccgacttggatcctttggctaatcctgatgctgttgacaagcaaaacacaaagagtgaagaggatagacaatgctga

Transcript

evm.model.Ap11.1443

ATGAACAGTTCTTATCAGCAAGTGTCGCAAGACCCTGATGAAAGTGATGAACGTCACAGATCTTACCAACCGTACCAAGATGACGATGAAGGCTATGAAGGAAACTACGGTTATAACTATGGCTACAATCCGTATCGACCTCCAGCTGGGGGAATCAAAGGAAAAGTGGAGCAGAAATACTGGCATACAAAGCAAACAGTGATCCAAAAGTTGGGAAAGGAACAAGACTGTTATGTCGTGGCAGGAGACTCTGAAGTTGATGCGCGCCTTGAGGCTTTTAGACATATACAGAAGACATGTATAGATATTCTGAAGGCTGTAGAAGTCTATCAAAATAGAATATTTGCTTTGTCTCAGGATGAGAATGAAATGGGACGCTTTCTTCGAGAACAAGGTTCCCAGGATAAATCCAAAGCTGGAAAGATGATGATTGCTGTCGGCAAGGCTCAGAGTTACTCTGCTCAACAAAGATTGAGCCTTAGAACTCCACTTGTAAGACTGTATCAAGAGGTTGAAACGTTCCGGTACCGTGCCATCTCCGACACATTCCAGACTGTTAATCGCATGGAACAGTCTAGAACAGACTACAGAGCTGGGCTCTTGTGGATGGCTAATATATCTAAAGAATTGGATCCTGAAGAATATAAGAGATTAGACAAATTTAGAGAGGTTCAAGGTCAAGTTCGGAAAGGTAAAAAGAAATTTGACAAGCTGAAAGTTGATGTTATGCAGAAGATAGATCTTCTGTCTGCGAGTAGATGTAACTTACTTTCAAGCACCCTTGCTGCATACCAGCAGGCTCTGCTCAAGTTTTGGGAGAACACTTCACGAACTATGACTCAAGTATCAGAACAGTTTAAAGGATTACCGACGTATCAGTTTCAAATGTTAAAAAGCCTGAATCCTCTAACTCTCGACGGAAATGACAAGGAAAAGGATGAGGAAGGGAAAGAAGCAAAACCAGACAAAGAGTCTGACGAAGACAAAAAGGAAGTGACGAATGGCAATGAAAAGAAGGAAGCTTCTAAAGATGATGATGATGATCAGCTTATATCATTAGATCATTCACCATTAGAGGAGAAGAATTCAGCCGCAGGGGCAAGTAAGAAGACTGATGAGGATGACGATGATGATGCGCTTTTAGAAACAGATTTACTTGGGGATGACGAAGTGTCCAATGGAAATGTAGAAAAGAATGAAAAGCCAAGTGCTTTTATTGATTTGTTGGGTGACGATGATTTGATGCCACCAAAACATCAATCAACTACAGATGATCTTCTTTCATCATTTGAGAGTCCTCCAAGCAGCAATGGCCTCAAGAGTCATGGTTCATTCATGCCACCAAGCTATGAGGCAGCCAAGCAAATTCCAGCATCAGGTTCAGGAAGTGAGAACACTTCATCAATGACAGCTGATGACCTGCTGTTTGGCTCCCCCACCAGGGAGGAGAGAGGAACAGAAAGCAAGTCAGATCTGGATATCTTAAACGAGATCCTTGGCTCTAATGGTGCTTCTTCCATGCAAGGTGCAGAAAATGATAACAGCTTCAGCAAGACATGGAAGGACATGTTTGGTGATGAGCCGCTTGAGACCACTCAACCGACACAGGAGCCGAATCAGTCTTGGTCCCAGGGAGGTGCCAATTTTATGATGCCATCTGACCTCCTTAACAGCATGGCCAAGTTTGACCCATTTACAGAGGTTCCCCCAGGTGTCCCACCTCAACAAGGCATGGGCATGCCTTCAAAGTCATTAGGTCTGGTCAATCCCCCACAGGCTCCGACAGGCAAGCGCACAAATAATCTTCCTCAATCACAGTCAAAACAGGCACCAGTGCTCCCTGGAAAGGGGAACGAGAAGGGGAAAGGTAAAGGGAAAAAAGGCCAAGACATGTCAGCTTGGTTCAGTCTGTTTTCCGACTTGGATCCTTTGGCTAATCCTGATGCTGTTGACAAGCAAAACACAAAGAGTGAAGAGGATAGACAATGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63054	Islet cell autoantigen 1 OS=Rattus norvegicus OX=10116 GN=Ica1 PE=2 SV=2
Q05084	Islet cell autoantigen 1 OS=Homo sapiens OX=9606 GN=ICA1 PE=1 SV=2
P97411	Islet cell autoantigen 1 OS=Mus musculus OX=10090 GN=Ica1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005005 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06456 all species →	Arfaptin	Arfaptin-like domain	Domain	Interproscan
PF04629 all species →	ICA69	Islet cell autoantigen ICA69, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010504 all species →	Domain	Arfaptin homology (AH) domain	Interproscan
IPR024114 all species →	Family	Islet cell autoantigen 1/Ica1-like	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR006723 all species →	Domain	Islet cell autoantigen Ica1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10164 all species →	ISLET CELL AUTOANTIGEN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019904 all species →	Molecular Function	protein domain specific binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0051049 all species →	Biological Process	regulation of transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19863	ICA1; islet cell auto antigen 1	-	Type I diabetes mellitus	ko04940	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.