Gene detail

Detailed information of evm.model.Ap11.1452 in Astrangia poculata

Genomic Location: Ap11:15916725...15917270
NR annotation: CAH3133846.1, unnamed protein product, partial [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7FAM5	E3 ubiquitin-protein ligase TRIM71 OS=Danio rerio OX=7955 GN=trim71 PE=1 SV=1
Q2Q1W2	E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens OX=9606 GN=TRIM71 PE=1 SV=1
Q1PRL4	E3 ubiquitin-protein ligase TRIM71 OS=Gallus gallus OX=9031 GN=TRIM71 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004952 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436 all species →	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10680 all species →	PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap11.1452.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.