Detailed information of evm.model.Ap11.1466 in Astrangia poculata

Genomic Location: Ap11:16148399...16175864
NR annotation: XP_020615754.1, probable RNA polymerase II nuclear localization protein SLC7A6OS [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q28GL6Probable RNA polymerase II nuclear localization protein SLC7A6OS OS=Xenopus tropicalis OX=8364 GN=slc7a6os PE=2 SV=1
Q5U3I2Probable RNA polymerase II nuclear localization protein SLC7A6OS OS=Danio rerio OX=7955 GN=slc7a6os PE=2 SV=1
A2BDB7Probable RNA polymerase II nuclear localization protein SLC7A6OS OS=Xenopus laevis OX=8355 GN=slc7a6os PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006610 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08574
all species →		Iwr1Transcription factor Iwr1 FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040218
all species →		FamilyProbable RNA polymerase II nuclear localization protein SLC7A6OSInterproscan
IPR013883
all species →		DomainTranscription factor Iwr1 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31196
all species →		RNA POLYMERASE II NUCLEAR LOCALIZATION PROTEIN SLC7A6OS-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0032502
all species →		Biological Processdevelopmental processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap11.1466.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap11.1466 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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