Genomic Location: Ap11:16196675...16201509
NR annotation: XP_027048484.1, protein transport protein Sec61 subunit beta-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap11.1471 |
| Transcript |
| evm.model.Ap11.1471 |
| Protein |
| evm.model.Ap11.1471 |
| UniProt accession | Description |
|---|---|
| P60467 | Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 GN=SEC61B PE=1 SV=2 |
| P60468 | Protein transport protein Sec61 subunit beta OS=Homo sapiens OX=9606 GN=SEC61B PE=1 SV=2 |
| Q5RB31 | Protein transport protein Sec61 subunit beta OS=Pongo abelii OX=9601 GN=SEC61B PE=3 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010503 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03911 all species → | Sec61_beta | Sec61beta family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR030671 all species → | Family | Protein transport Sec61-beta/Sbh | Interproscan |
| IPR016482 all species → | Family | Protein transport protein SecG/Sec61-beta/Sbh | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13509 all species → | SEC61 SUBUNIT BETA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005086 all species → | Molecular Function | guanyl-nucleotide exchange factor activity | Interproscan |
| GO:0005784 all species → | Cellular Component | Sec61 translocon complex | Interproscan |
| GO:0006616 all species → | Biological Process | SRP-dependent cotranslational protein targeting to membrane, translocation | Interproscan |
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0031204 all species → | Biological Process | post-translational protein targeting to membrane, translocation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K09481 | SEC61B, SBH2; protein transport protein SEC61 subunit beta | - | Secretion system | ko02044 | deepkoala |
Transcript abundance of evm.model.Ap11.1471 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
