Detailed information of evm.model.Ap11.1498.1.5f15de0a in Astrangia poculata

Genomic Location: Ap11:16632092...16646790
NR annotation: XP_044169508.1, LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5-like [Acropora millepora]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q15542Transcription initiation factor TFIID subunit 5 OS=Homo sapiens OX=9606 GN=TAF5 PE=1 SV=3
Q8C092Transcription initiation factor TFIID subunit 5 OS=Mus musculus OX=10090 GN=Taf5 PE=1 SV=1
P49846Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster OX=7227 GN=Taf5 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001573 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF04494
all species →		TFIID_NTD2WD40 associated region in TFIID subunit, NTD2 domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037264
all species →		Homologous_superfamilyTFIID subunit TAF5, NTD2 domain superfamilyInterproscan
IPR020472
all species →		RepeatG-protein beta WD-40 repeatInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR007582
all species →		DomainTFIID subunit TAF5, NTD2 domainInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR006594
all species →		Conserved_siteLIS1 homology motifInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19879
all species →		TRANSCRIPTION INITIATION FACTOR TFIIDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005669
all species →		Cellular Componenttranscription factor TFIID complexInterproscan
GO:0006367
all species →		Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0016251
all species →		Molecular FunctionRNA polymerase II general transcription initiation factor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap11.1498.1.5f15de0a.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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