Gene detail

Detailed information of evm.model.Ap11.1527 in Astrangia poculata

Genomic Location: Ap11:16867856...16872084
NR annotation: XP_020610325.1, uncharacterized protein LOC110048909 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.1527

atggctggttatcgctatgttcctccggacgaattcacacctgagtctcgagtaaactgggtcagtgtgggtagggtgacaaagtggactcaagaagaagaaggtatcgtggataaattcactctctatcttgacggcggcctcaaagtttacatctacttcctgtcgcacaccacattccgtgtacggttcaaccctgacccgaacgcgccgtatgtcaagagccgctcccctgccacggagactgaacgcatcgaggcgcatgagctgaaggtgaaagaagaaaacggcgtactgaaaatacgaaccgacaagatcgaagtgcgcgtcaacttgaagaagtacgcgctgtctgtttaccgtgaaggacagttgatccatgcagacccagctgactacaacctggtctacgtaaaacaaaatgacggcggcgaagctatcgctcagttcaagatggcgcccactaatgctcagtactttggatttggagagaaagccggtgccactcttaataagcgccgtgttccaaagcagcatttctatggtcagtacgccggtggaagcgagaaaatgggtgctgccatgacatttttcaactatgataactttggctacaccgcacctgatctgacacccgagggggaggtacaggggccattgaatcccgactctccattgtaccagtcttcaccgttccttatcgagcacaaccctattcccgatggagcgttcgctggaccttcgtacgcctacggaattctgctcgacaatacttcgcagacgttcatgaacttccgccagggaggtcagtactacttcggggcgttgcacggagagcttgattattacttctttgctggcaggcatgtggccgaagtcctcagcgagttcgttcaactgacgggacgcactcatctgaagcccaagtacgtgttcggttaccaccagggaggctacggtcccaactacaacaccaagtggaagttgatggaggtagcgctcaagtatcggcagtggaagattccgattgatggcctccacgtagatgtcgacctgcaggacaactaccgcacgttcacgcacagcaagaccaagtttcctgatcctaaagagatgtttgatgccttgcacgactggggattcaagtgcagcaccaacattacgcctatcatcagcagtaatacagatgaaaatggcgagtacagtccgtacaaagccctggacaccggaaaagcaagcggcatgtttgtaatgaacaccagagaagacggcagtggaacccatgatccctacattggtaatgtcaactatgggcgtggtcatctcacttggggtcactaccctgatctggggcggcacgacgcacagaaatggtggggcgaacagtaccgtgacctgttggattggggtttggacttcgtctggcaagacatgaccaccccagcgatgaaagccagcgttcatcagcctgactgtgacctgctgtcatttcccatggatttgatgctcagtgacaatgaagagaccaggtattccgaaacgagcacttataatgacaaaaagccatttgccaagatccgctgtttgttcaactacaacctgtgtaaagctacctatcagggactgcagcgtctcagaccaaccaaacgtcactatatcatcgctcgtggtggcttcgttggcgtccatcgctatgctggcttgtggacaggcgacagtacgtctaactgggaattcgtgcagatgaatatcccactgatccttggtatcggcctttccgctcagcctgtctccgggtgcgacattggcggcttctgtgcagcatggcaaggccagatcgtcgatccggagttgcttgctcgttggaccatcatgggagccttcctgccgtggtttcgcaatcattatgataactactacaagccctaccaggagccgtaccgctatgaagaacccttgcctaccatctgccgcaagtacatcgagatgcggtaccgcctgatccagtacatctacgatgccatgtatgaaaatacacagacaggcaagccaatctgcaggcctctcttcatggacgagatcaaaccaggagagttcaataatgatccgtatgcagacgatgatcacggctgggattacaatggctacactgctaaccgccttgatgatcagttcttcctgggaaaagacatcttggtggcacccattgtcaatccaggacaaacaagtcgcgccgtatacctcccctctggaagccaatggtactgtttcacagatgacaaacgccctcttcaagatcctgtccagggaggggtagagttcgatttttatgctccttggaacgaccccgataaagacaactgcgccatttacatccgggaaggcgccattatacccaagcgtgaactggagcagtatatcggtgagcttaacgctcacggcaagatgaaccccatcacattcagtatctaccccggccgtaacagcagctacaagttgtatctggatgacgacggtgttactaacaaagcagagaccgctggcgagtaccgactgactgaaatcagtcacgaaggcattgctggaggtcagcggattcgcatcaaacgtctacacgacaaattcaaaccacctgagacgttctattacctgagcatgccgggaacaatcagtccaagtaaagtcacagcagccggcaaaaatctgccgcagaaacttggagacacggacgagcaagctgctcaagctctggtcgagcacaaagatgagcctggggcttattactacaacaagtttctgaagacaaccttcattaagatctttgacacctcaactgacatcactgttgaagcagttttctga

Transcript

evm.model.Ap11.1527

ATGGCTGGTTATCGCTATGTTCCTCCGGACGAATTCACACCTGAGTCTCGAGTAAACTGGGTCAGTGTGGGTAGGGTGACAAAGTGGACTCAAGAAGAAGAAGGTATCGTGGATAAATTCACTCTCTATCTTGACGGCGGCCTCAAAGTTTACATCTACTTCCTGTCGCACACCACATTCCGTGTACGGTTCAACCCTGACCCGAACGCGCCGTATGTCAAGAGCCGCTCCCCTGCCACGGAGACTGAACGCATCGAGGCGCATGAGCTGAAGGTGAAAGAAGAAAACGGCGTACTGAAAATACGAACCGACAAGATCGAAGTGCGCGTCAACTTGAAGAAGTACGCGCTGTCTGTTTACCGTGAAGGACAGTTGATCCATGCAGACCCAGCTGACTACAACCTGGTCTACGTAAAACAAAATGACGGCGGCGAAGCTATCGCTCAGTTCAAGATGGCGCCCACTAATGCTCAGTACTTTGGATTTGGAGAGAAAGCCGGTGCCACTCTTAATAAGCGCCGTGTTCCAAAGCAGCATTTCTATGGTCAGTACGCCGGTGGAAGCGAGAAAATGGGTGCTGCCATGACATTTTTCAACTATGATAACTTTGGCTACACCGCACCTGATCTGACACCCGAGGGGGAGGTACAGGGGCCATTGAATCCCGACTCTCCATTGTACCAGTCTTCACCGTTCCTTATCGAGCACAACCCTATTCCCGATGGAGCGTTCGCTGGACCTTCGTACGCCTACGGAATTCTGCTCGACAATACTTCGCAGACGTTCATGAACTTCCGCCAGGGAGGTCAGTACTACTTCGGGGCGTTGCACGGAGAGCTTGATTATTACTTCTTTGCTGGCAGGCATGTGGCCGAAGTCCTCAGCGAGTTCGTTCAACTGACGGGACGCACTCATCTGAAGCCCAAGTACGTGTTCGGTTACCACCAGGGAGGCTACGGTCCCAACTACAACACCAAGTGGAAGTTGATGGAGGTAGCGCTCAAGTATCGGCAGTGGAAGATTCCGATTGATGGCCTCCACGTAGATGTCGACCTGCAGGACAACTACCGCACGTTCACGCACAGCAAGACCAAGTTTCCTGATCCTAAAGAGATGTTTGATGCCTTGCACGACTGGGGATTCAAGTGCAGCACCAACATTACGCCTATCATCAGCAGTAATACAGATGAAAATGGCGAGTACAGTCCGTACAAAGCCCTGGACACCGGAAAAGCAAGCGGCATGTTTGTAATGAACACCAGAGAAGACGGCAGTGGAACCCATGATCCCTACATTGGTAATGTCAACTATGGGCGTGGTCATCTCACTTGGGGTCACTACCCTGATCTGGGGCGGCACGACGCACAGAAATGGTGGGGCGAACAGTACCGTGACCTGTTGGATTGGGGTTTGGACTTCGTCTGGCAAGACATGACCACCCCAGCGATGAAAGCCAGCGTTCATCAGCCTGACTGTGACCTGCTGTCATTTCCCATGGATTTGATGCTCAGTGACAATGAAGAGACCAGGTATTCCGAAACGAGCACTTATAATGACAAAAAGCCATTTGCCAAGATCCGCTGTTTGTTCAACTACAACCTGTGTAAAGCTACCTATCAGGGACTGCAGCGTCTCAGACCAACCAAACGTCACTATATCATCGCTCGTGGTGGCTTCGTTGGCGTCCATCGCTATGCTGGCTTGTGGACAGGCGACAGTACGTCTAACTGGGAATTCGTGCAGATGAATATCCCACTGATCCTTGGTATCGGCCTTTCCGCTCAGCCTGTCTCCGGGTGCGACATTGGCGGCTTCTGTGCAGCATGGCAAGGCCAGATCGTCGATCCGGAGTTGCTTGCTCGTTGGACCATCATGGGAGCCTTCCTGCCGTGGTTTCGCAATCATTATGATAACTACTACAAGCCCTACCAGGAGCCGTACCGCTATGAAGAACCCTTGCCTACCATCTGCCGCAAGTACATCGAGATGCGGTACCGCCTGATCCAGTACATCTACGATGCCATGTATGAAAATACACAGACAGGCAAGCCAATCTGCAGGCCTCTCTTCATGGACGAGATCAAACCAGGAGAGTTCAATAATGATCCGTATGCAGACGATGATCACGGCTGGGATTACAATGGCTACACTGCTAACCGCCTTGATGATCAGTTCTTCCTGGGAAAAGACATCTTGGTGGCACCCATTGTCAATCCAGGACAAACAAGTCGCGCCGTATACCTCCCCTCTGGAAGCCAATGGTACTGTTTCACAGATGACAAACGCCCTCTTCAAGATCCTGTCCAGGGAGGGGTAGAGTTCGATTTTTATGCTCCTTGGAACGACCCCGATAAAGACAACTGCGCCATTTACATCCGGGAAGGCGCCATTATACCCAAGCGTGAACTGGAGCAGTATATCGGTGAGCTTAACGCTCACGGCAAGATGAACCCCATCACATTCAGTATCTACCCCGGCCGTAACAGCAGCTACAAGTTGTATCTGGATGACGACGGTGTTACTAACAAAGCAGAGACCGCTGGCGAGTACCGACTGACTGAAATCAGTCACGAAGGCATTGCTGGAGGTCAGCGGATTCGCATCAAACGTCTACACGACAAATTCAAACCACCTGAGACGTTCTATTACCTGAGCATGCCGGGAACAATCAGTCCAAGTAAAGTCACAGCAGCCGGCAAAAATCTGCCGCAGAAACTTGGAGACACGGACGAGCAAGCTGCTCAAGCTCTGGTCGAGCACAAAGATGAGCCTGGGGCTTATTACTACAACAAGTTTCTGAAGACAACCTTCATTAAGATCTTTGACACCTCAACTGACATCACTGTTGAAGCAGTTTTCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9F234	Alpha-glucosidase 2 OS=Bacillus thermoamyloliquefaciens OX=1425 PE=3 SV=1
Q6P7A9	Lysosomal alpha-glucosidase OS=Rattus norvegicus OX=10116 GN=Gaa PE=2 SV=1
Q9MYM4	Lysosomal alpha-glucosidase OS=Bos taurus OX=9913 GN=GAA PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006772 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21365 all species →	Glyco_hydro_31_3rd	Glycosyl hydrolase family 31 C-terminal domain	Domain	Interproscan
PF13802 all species →	Gal_mutarotas_2	Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain	Domain	Interproscan
PF01055 all species →	Glyco_hydro_31_2nd	Glycosyl hydrolases family 31 TIM-barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR048395 all species →	Domain	Glycosyl hydrolase family 31, C-terminal domain	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR025887 all species →	Domain	Glycoside hydrolase family 31, N-terminal domain	Interproscan
IPR000322 all species →	Domain	Glycoside hydrolase family 31, TIM barrel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22762 all species →	ALPHA-GLUCOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01187	malZ; alpha-glucosidase	EC:3.2.1.20	Starch and sucrose metabolism	ko00500	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.