Gene detail

Detailed information of evm.model.Ap11.1537 in Astrangia poculata

Genomic Location: Ap11:17050921...17062958
NR annotation: MCT4602693.1, reverse transcriptase domain-containing protein [Marinifilum sp.]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.1537

atggtagctccaaaatgtaattttataactttaaatgttagaggtataagaaaccgtgtcaaaagaagatccatctttagttatttgaaagatcaaaattgccatttttatctcttgcaagaaactttctcagaaccaaaagatgaacttgcatggaaaaatgaatggggaggtgacgttttcttctcgcacggatcaaatcacagcaaaggtgtttgtattcttgtgaacccttctgttgtcgtaaacgtagaaaacagttacaaagacattgacggtcgaattattgcaatagatgtaatttgcaggggtgtaaatctatctatctgtaatgtgtatgctcctaccaaccgtcagtcgcaaggaaaattcttgcagattcttaacgaatttatgacttcaaatttaaacatcacacagttaattgtaggtggagactggaatgctacgttagatagcattgacaagaaaggtggcataagttggaaaccaacggcttatcggaatggtattatctcaatgatggaagaactcgatctaattgacatttttcgaaagcaaaaaccccatacaaaaagtttttcatatgagtctaaatttttgaaagtcaaatcgcgaatcgattattttcttatagcaaaacacctcactcaatacgcccacaacgttgaaacaaagactgcaatcacgccagatcacaaagcaatcaaactcagtttaaagttatcccaggtgtcaaggggcccaggattatggaaatttaacaactcacttttaaaagacaacaattacttgactctaattacagacagctatccaatcatcagtgagaaatatgccaacataggtgacaaaagactaagatgggaactgattaaaatggaaattagaagcatcactatttctttcgccgctcgcaaagcaaaagaatttcgcaaacaagaatccgaccttcaaaagcgcttagacgaaatcgacaaaagtataagcaacagtagtgataaccaaaataccgaagacaaactgaaagaatatgacaggttaaaaaatgaattaaatcgcctctatgaaatcaagggcaaaggcgcaatttttcgctccaaagtgagatgggttgaactaggtgaaaagccaaccaaatactttttcaacatggagaaaaaaaattacaataaaaaagttatatcggaactcaaaaggtctgacggaaaaattattgtccatgatcaggatataatgtctgatatccaaaccttttatgagaatttgtacagctcgaatattgaccacagtagtaatgtttttactgactttggtagcgatttacaattcgcgaaattatctgatgaggagaagacaaatcttgatggcgaaataacgttagaagagtgtgagaaaatcttaaacacctttcaaaatgggaaatcgccaggggacgatggttttacagccgagttctataagcaatatttcagcctcctaggtcaggatttggtaaatagtttaaatgcagcttttgatttcggcgaaatgtctgtgtcccagcgaagaggagttattacgcttctacccaaagaagatgcaaatttgttgtttttgtcaaattggcgtccaataacactattaaacgtagactataagatagcgtcaaaagttatcgctaagaggatagaacgcgttttaccatctcttattcatccagatcagactggttttatgaaagggagatacataggacaaaacattaggcttataaatgacattatccagcaaactgagctacaaaagatccctgggatactgctacttctagactttcaaaaagcattcgataccctagaatggtcttttattcaaaataccctcaacctgttcaactttggtaacggcattaaaaaatggatctctacgttctatacgaactctgagagcagcgtcttgaacaatggtttttgtacaaactattttaaattgtcgagaggggtgaggcagggttgccccttatcaccgtatctcttcatcttagctgcagaagttcttgccacaaagatccgacaagacaaaactgtcagaggtatcacaatcctcggaacagagtcgaaaataagtcaattcgcggatgacacatcagccttttgtgataatttattatctgtccaaaacttgattgcaatagttaacgatttcgggacatattcaggtctgaaactaaacacttcaaaaaccaaagcgatatggttaggcccatggcgcaatagggaagatcagcccttcaatctaaaatggacaaaagaacctgttagaactcttgggatctttgtttcttacgatgaaaatgggaatgagaaaagaaactttacgcttaaggttcgaaagcttaatacaaatcttgatatttggagatcaaggaatctcagtttatttggaaggtgtttgataacaaaaagtctcggcattccacatttagtatactctacttcaatgttagtcatcccctcggaaactgtctcttcagttacaacctctctatttgactttatctggtgtaaaaaaccggacaaagttaaaaggcaagtcatgtatcaagactatgttgacggaggattacgtgtgccaaatatggaggtattgtggtactttttagaacttaaaaccctgtatgaaagtgacaatggacaagaaatgatactgttcaataacaaagaaattctcattgggaataggccgatttttctgaaaagctggtttgaagaaggaattgtctctatccaagatattctcagcgagaacggaaagatctataggcttaatggagctttgaacggccgagtcaaaagaaatctgtggtttatttccttgcttagcagggttgaggaagtcacagccgagaagactcgtaacaggactccaggacagccccaagaagaccagccacctcgaccggaaaatcacgtccctcctgaaataaaccttgctgcatctgaagaggcattttattcccacgaacaaacatattcctttccttcggaggaaagtttctccccgcctctgtccccacaggattcaggaatgaacggccacatctcaccaccccttcctgcttcgtctggctttacaaaggcccaaaagtctcctgagtcgggtgtactggctgcaaaaaccgaagctaacgctctgcggattgaaaaccgggacttggttcgaatcaagagaaaacaggaggaacaggttcgaaacctggttcaggaagtcgcgacattgggaacaaggtgtaacgagctcgagagtattgcacagcgccttgaagtagaaaatcatcgtctttcacaacaattggctctggcacacagtggtgcgcagaccggttacaactttggaccacacgaagagatacagctcttgagacaacagttgaaagtgtatgaagatgattttaagaaagaaaggtcggagagggagcaattaaatacacagaaagaacgcctcaagagagaattaagtgactccaaagccactgtcgctggtctgcagcggcaactcaaacaggctcttaacggagagggtggatacggcgagccacgtgtcactcgtggtccaattatgaacgagccctactacgaaccgtacattgcgaggcacccgctggattatgggatggcacgtacatactcaggggggtacattggtcctggtgctagcaacgatgtgcttcgtcgtggacagacgccatacgtcagaaaggcgttcctgtcaccggacgtgacagctgtcattgaccgtgatcgtgacaccgtagatggctcagctaaatgtccgccaaaaagcatttga

Transcript

evm.model.Ap11.1537

ATGGTAGCTCCAAAATGTAATTTTATAACTTTAAATGTTAGAGGTATAAGAAACCGTGTCAAAAGAAGATCCATCTTTAGTTATTTGAAAGATCAAAATTGCCATTTTTATCTCTTGCAAGAAACTTTCTCAGAACCAAAAGATGAACTTGCATGGAAAAATGAATGGGGAGGTGACGTTTTCTTCTCGCACGGATCAAATCACAGCAAAGGTGTTTGTATTCTTGTGAACCCTTCTGTTGTCGTAAACGTAGAAAACAGTTACAAAGACATTGACGGTCGAATTATTGCAATAGATGTAATTTGCAGGGGTGTAAATCTATCTATCTGTAATGTGTATGCTCCTACCAACCGTCAGTCGCAAGGAAAATTCTTGCAGATTCTTAACGAATTTATGACTTCAAATTTAAACATCACACAGTTAATTGTAGGTGGAGACTGGAATGCTACGTTAGATAGCATTGACAAGAAAGGTGGCATAAGTTGGAAACCAACGGCTTATCGGAATGGTATTATCTCAATGATGGAAGAACTCGATCTAATTGACATTTTTCGAAAGCAAAAACCCCATACAAAAAGTTTTTCATATGAGTCTAAATTTTTGAAAGTCAAATCGCGAATCGATTATTTTCTTATAGCAAAACACCTCACTCAATACGCCCACAACGTTGAAACAAAGACTGCAATCACGCCAGATCACAAAGCAATCAAACTCAGTTTAAAGTTATCCCAGGTGTCAAGGGGCCCAGGATTATGGAAATTTAACAACTCACTTTTAAAAGACAACAATTACTTGACTCTAATTACAGACAGCTATCCAATCATCAGTGAGAAATATGCCAACATAGGTGACAAAAGACTAAGATGGGAACTGATTAAAATGGAAATTAGAAGCATCACTATTTCTTTCGCCGCTCGCAAAGCAAAAGAATTTCGCAAACAAGAATCCGACCTTCAAAAGCGCTTAGACGAAATCGACAAAAGTATAAGCAACAGTAGTGATAACCAAAATACCGAAGACAAACTGAAAGAATATGACAGGTTAAAAAATGAATTAAATCGCCTCTATGAAATCAAGGGCAAAGGCGCAATTTTTCGCTCCAAAGTGAGATGGGTTGAACTAGGTGAAAAGCCAACCAAATACTTTTTCAACATGGAGAAAAAAAATTACAATAAAAAAGTTATATCGGAACTCAAAAGGTCTGACGGAAAAATTATTGTCCATGATCAGGATATAATGTCTGATATCCAAACCTTTTATGAGAATTTGTACAGCTCGAATATTGACCACAGTAGTAATGTTTTTACTGACTTTGGTAGCGATTTACAATTCGCGAAATTATCTGATGAGGAGAAGACAAATCTTGATGGCGAAATAACGTTAGAAGAGTGTGAGAAAATCTTAAACACCTTTCAAAATGGGAAATCGCCAGGGGACGATGGTTTTACAGCCGAGTTCTATAAGCAATATTTCAGCCTCCTAGGTCAGGATTTGGTAAATAGTTTAAATGCAGCTTTTGATTTCGGCGAAATGTCTGTGTCCCAGCGAAGAGGAGTTATTACGCTTCTACCCAAAGAAGATGCAAATTTGTTGTTTTTGTCAAATTGGCGTCCAATAACACTATTAAACGTAGACTATAAGATAGCGTCAAAAGTTATCGCTAAGAGGATAGAACGCGTTTTACCATCTCTTATTCATCCAGATCAGACTGGTTTTATGAAAGGGAGATACATAGGACAAAACATTAGGCTTATAAATGACATTATCCAGCAAACTGAGCTACAAAAGATCCCTGGGATACTGCTACTTCTAGACTTTCAAAAAGCATTCGATACCCTAGAATGGTCTTTTATTCAAAATACCCTCAACCTGTTCAACTTTGGTAACGGCATTAAAAAATGGATCTCTACGTTCTATACGAACTCTGAGAGCAGCGTCTTGAACAATGGTTTTTGTACAAACTATTTTAAATTGTCGAGAGGGGTGAGGCAGGGTTGCCCCTTATCACCGTATCTCTTCATCTTAGCTGCAGAAGTTCTTGCCACAAAGATCCGACAAGACAAAACTGTCAGAGGTATCACAATCCTCGGAACAGAGTCGAAAATAAGTCAATTCGCGGATGACACATCAGCCTTTTGTGATAATTTATTATCTGTCCAAAACTTGATTGCAATAGTTAACGATTTCGGGACATATTCAGGTCTGAAACTAAACACTTCAAAAACCAAAGCGATATGGTTAGGCCCATGGCGCAATAGGGAAGATCAGCCCTTCAATCTAAAATGGACAAAAGAACCTGTTAGAACTCTTGGGATCTTTGTTTCTTACGATGAAAATGGGAATGAGAAAAGAAACTTTACGCTTAAGGTTCGAAAGCTTAATACAAATCTTGATATTTGGAGATCAAGGAATCTCAGTTTATTTGGAAGGTGTTTGATAACAAAAAGTCTCGGCATTCCACATTTAGTATACTCTACTTCAATGTTAGTCATCCCCTCGGAAACTGTCTCTTCAGTTACAACCTCTCTATTTGACTTTATCTGGTGTAAAAAACCGGACAAAGTTAAAAGGCAAGTCATGTATCAAGACTATGTTGACGGAGGATTACGTGTGCCAAATATGGAGGTATTGTGGTACTTTTTAGAACTTAAAACCCTGTATGAAAGTGACAATGGACAAGAAATGATACTGTTCAATAACAAAGAAATTCTCATTGGGAATAGGCCGATTTTTCTGAAAAGCTGGTTTGAAGAAGGAATTGTCTCTATCCAAGATATTCTCAGCGAGAACGGAAAGATCTATAGGCTTAATGGAGCTTTGAACGGCCGAGTCAAAAGAAATCTGTGGTTTATTTCCTTGCTTAGCAGGGTTGAGGAAGTCACAGCCGAGAAGACTCGTAACAGGACTCCAGGACAGCCCCAAGAAGACCAGCCACCTCGACCGGAAAATCACGTCCCTCCTGAAATAAACCTTGCTGCATCTGAAGAGGCATTTTATTCCCACGAACAAACATATTCCTTTCCTTCGGAGGAAAGTTTCTCCCCGCCTCTGTCCCCACAGGATTCAGGAATGAACGGCCACATCTCACCACCCCTTCCTGCTTCGTCTGGCTTTACAAAGGCCCAAAAGTCTCCTGAGTCGGGTGTACTGGCTGCAAAAACCGAAGCTAACGCTCTGCGGATTGAAAACCGGGACTTGGTTCGAATCAAGAGAAAACAGGAGGAACAGGTTCGAAACCTGGTTCAGGAAGTCGCGACATTGGGAACAAGGTGTAACGAGCTCGAGAGTATTGCACAGCGCCTTGAAGTAGAAAATCATCGTCTTTCACAACAATTGGCTCTGGCACACAGTGGTGCGCAGACCGGTTACAACTTTGGACCACACGAAGAGATACAGCTCTTGAGACAACAGTTGAAAGTGTATGAAGATGATTTTAAGAAAGAAAGGTCGGAGAGGGAGCAATTAAATACACAGAAAGAACGCCTCAAGAGAGAATTAAGTGACTCCAAAGCCACTGTCGCTGGTCTGCAGCGGCAACTCAAACAGGCTCTTAACGGAGAGGGTGGATACGGCGAGCCACGTGTCACTCGTGGTCCAATTATGAACGAGCCCTACTACGAACCGTACATTGCGAGGCACCCGCTGGATTATGGGATGGCACGTACATACTCAGGGGGGTACATTGGTCCTGGTGCTAGCAACGATGTGCTTCGTCGTGGACAGACGCCATACGTCAGAAAGGCGTTCCTGTCACCGGACGTGACAGCTGTCATTGACCGTGATCGTGACACCGTAGATGGCTCAGCTAAATGTCCGCCAAAAAGCATTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P14381	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1
P11369	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2
O00370	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000039 (this species only)
Ubiquitin family	UBD\|Alpha-Helix\|UBAN · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF16516 all species →	CC2-LZ	Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator	Coiled-coil	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR032419 all species →	Domain	NF-kappa-B essential modulator NEMO, CC2-LZ domain	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31635 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20279	SYNJ; synaptojanin	EC:3.1.3.36	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.