Gene detail

Detailed information of evm.model.Ap11.1545_evm.model.Ap11.1567 in Astrangia poculata

Genomic Location: Ap11:17111373...17253398
NR annotation: KAJ7373107.1, Ankyrin repeat and IBR domain-containing protein 1 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.1545_evm.model.Ap11.1567

atggaagtttgctccatctgtgaggatagaatagtctatgaagatgttccactttctctttcttgtggccatgaattctgccgttcttgctgggaggggtatttgaatgtgaagatcaaggaagggaaggcacacagcatacagtgtcctgcatatgattgcagtgctcttgtacctgtggaaactattgaaagtcttgtctcaagagaaatggcaaggaggtaccttcagtttgacatcaaggcctttgtagagagtaaccctaccttgaaatggtgtccttcccctggctgcggccaagcggtgaggttaccatcaagtatgttgcccgcactgaatgttgctgttgaagcaagttcttcagaagaaactgaacctatgattgttgactgtggcaagggtcacttcttctgttggcattgtcttaatgaagctcatgctccttgtgcctgtcaactgtggagtaaatggctgaagaaaattgcagaaatgatgccaaagatacctacaacacaagatatttctgagtgtcctgaaacagaagtagtagccaatacgctgtggctggtgacaaactctaaatcatgtcccaactgcaaatcacccattcagaagaatgaaggctgtaaccatatgaaatgtacaaagtgtaaacacgagttctgctgggtttgtttagaacaatggaaaaaacacagttctgctacaggaggatattttaggtgtaatcgatttgagattgtacaaaaagtggaatcagagtcagccaagatagtaacagaggcaagtacaaggaacgatcaaatcatggagttaaattgttttctacattactactctcgcttcaagaatcacgaaaacagttacaagtttgaggaacctttattaagtacagcaaaagataaaatgacggcactggctttggcggccatggaaacagctgcaacatcagctgaaaatgctgacacagcattcatcgaggatgcggtgcatgagttgctcaacgccaggagagttctcagggcttcatatgcttacggttattatctcactggtaataaagacaagaaagctatctttgagtcgatgcagactgaagtagaggaagcgacagagaccttgtcacagatggtggctcgaccctacttacgaacaccacgtgcacaaattatccaaacaacacagcttctacacaggaaacgacaagacttcttgttggctctgactcgaggcctcatccctgatgacgacgagccatcagaacccagaagctttgtgtccaggttacgtcttctctcaccatcaggcgttagccaagacagtgagtctgacgaggatgaagataactacgacgaagtccgctgcaggattgaacagtccattataaaagagcgtctctctcgcttggcggcgtttggttcccccgactcaccccctgttagtagtgatgcagtggaagaccaagcagctgccaaggagaagatcagttgcgaggctattcacaaaagattcaacctcactgcctgttacctgtgcaaaaatggaaatgggaaagacaagagagaggagaaaaagaaacgacgtcaccgccgaagccagcctgctgaggtagacgaagaacttgatgttgatttcatgagagcgatccagctgtcgttgctacaacacagcacaccagccaatcagaggagccgtcaatcaagctcatccagcagctcggcgagttccaaccgagatcaagcacaaggcgtgcagacaccacaagacttgtcggtcttctctgtcgtcgatggtgcttctcttcaaaaagctatcgagctgtcactacaagactctgctgtgggagaagtgtcctcgtctccagatgatgatcttaaaaaagccatcaagctatcactgcaggacagtggtctcccgccagcgggaaatgatggcagcggacacacagacaattcatcacaaagccatcaatcaaaacgtcaacaagatagtgacagtgacagtgaattgtctacagtttttgtacactattcaaggtattccggcattgaatccttggctaacagtcgtcacaagatggtcctggttgaggagtttcaaagcgagcagttaaaccatatcaagtttgcttacattgtatttaacgaatttcccaaggccttacgtgaagctttcagatccatgtgggacaaaaagtatggaaatctacccggttaccgactttgggacgactcaactgctgtaagacatttatttcttagtacggagggtggaagaactgacgtccccacaaacattccttatgatgaatgggactgcaccgcgttgttcaaggcaactatctatgcgcgttccttcgcactaaacaggaaaagtcgacactacaagacactgagtgatttgtacgtgagtccccgtaaaccttctcacggaaattttcatgtttgcgtaaaaagcgcaaatggaaacaacgaagaaacgtttgcgttggccatcgatcaactccgccttttaagaaatgcgctttgtcactcaaacagatctgagcttgacagagcaacatttgaacgttattttaaatacgccaaagaagcgtttaatgctcttggagtcaccacagttgctattgatcaagtagaaagtttgccagaatcgatgatggcgcgcggaacatcgcggattttggagcgaggcatatttttctcgtacccagatctcttgcgcttttttttttttcaattcgggacaaaaatgcgcatagtaattaagcaaattgcaaacatagttgcaaacgaaagtaagcatgtttag

Transcript

evm.model.Ap11.1545_evm.model.Ap11.1567

ATGGAAGTTTGCTCCATCTGTGAGGATAGAATAGTCTATGAAGATGTTCCACTTTCTCTTTCTTGTGGCCATGAATTCTGCCGTTCTTGCTGGGAGGGGTATTTGAATGTGAAGATCAAGGAAGGGAAGGCACACAGCATACAGTGTCCTGCATATGATTGCAGTGCTCTTGTACCTGTGGAAACTATTGAAAGTCTTGTCTCAAGAGAAATGGCAAGGAGGTACCTTCAGTTTGACATCAAGGCCTTTGTAGAGAGTAACCCTACCTTGAAATGGTGTCCTTCCCCTGGCTGCGGCCAAGCGGTGAGGTTACCATCAAGTATGTTGCCCGCACTGAATGTTGCTGTTGAAGCAAGTTCTTCAGAAGAAACTGAACCTATGATTGTTGACTGTGGCAAGGGTCACTTCTTCTGTTGGCATTGTCTTAATGAAGCTCATGCTCCTTGTGCCTGTCAACTGTGGAGTAAATGGCTGAAGAAAATTGCAGAAATGATGCCAAAGATACCTACAACACAAGATATTTCTGAGTGTCCTGAAACAGAAGTAGTAGCCAATACGCTGTGGCTGGTGACAAACTCTAAATCATGTCCCAACTGCAAATCACCCATTCAGAAGAATGAAGGCTGTAACCATATGAAATGTACAAAGTGTAAACACGAGTTCTGCTGGGTTTGTTTAGAACAATGGAAAAAACACAGTTCTGCTACAGGAGGATATTTTAGGTGTAATCGATTTGAGATTGTACAAAAAGTGGAATCAGAGTCAGCCAAGATAGTAACAGAGGCAAGTACAAGGAACGATCAAATCATGGAGTTAAATTGTTTTCTACATTACTACTCTCGCTTCAAGAATCACGAAAACAGTTACAAGTTTGAGGAACCTTTATTAAGTACAGCAAAAGATAAAATGACGGCACTGGCTTTGGCGGCCATGGAAACAGCTGCAACATCAGCTGAAAATGCTGACACAGCATTCATCGAGGATGCGGTGCATGAGTTGCTCAACGCCAGGAGAGTTCTCAGGGCTTCATATGCTTACGGTTATTATCTCACTGGTAATAAAGACAAGAAAGCTATCTTTGAGTCGATGCAGACTGAAGTAGAGGAAGCGACAGAGACCTTGTCACAGATGGTGGCTCGACCCTACTTACGAACACCACGTGCACAAATTATCCAAACAACACAGCTTCTACACAGGAAACGACAAGACTTCTTGTTGGCTCTGACTCGAGGCCTCATCCCTGATGACGACGAGCCATCAGAACCCAGAAGCTTTGTGTCCAGGTTACGTCTTCTCTCACCATCAGGCGTTAGCCAAGACAGTGAGTCTGACGAGGATGAAGATAACTACGACGAAGTCCGCTGCAGGATTGAACAGTCCATTATAAAAGAGCGTCTCTCTCGCTTGGCGGCGTTTGGTTCCCCCGACTCACCCCCTGTTAGTAGTGATGCAGTGGAAGACCAAGCAGCTGCCAAGGAGAAGATCAGTTGCGAGGCTATTCACAAAAGATTCAACCTCACTGCCTGTTACCTGTGCAAAAATGGAAATGGGAAAGACAAGAGAGAGGAGAAAAAGAAACGACGTCACCGCCGAAGCCAGCCTGCTGAGGTAGACGAAGAACTTGATGTTGATTTCATGAGAGCGATCCAGCTGTCGTTGCTACAACACAGCACACCAGCCAATCAGAGGAGCCGTCAATCAAGCTCATCCAGCAGCTCGGCGAGTTCCAACCGAGATCAAGCACAAGGCGTGCAGACACCACAAGACTTGTCGGTCTTCTCTGTCGTCGATGGTGCTTCTCTTCAAAAAGCTATCGAGCTGTCACTACAAGACTCTGCTGTGGGAGAAGTGTCCTCGTCTCCAGATGATGATCTTAAAAAAGCCATCAAGCTATCACTGCAGGACAGTGGTCTCCCGCCAGCGGGAAATGATGGCAGCGGACACACAGACAATTCATCACAAAGCCATCAATCAAAACGTCAACAAGATAGTGACAGTGACAGTGAATTGTCTACAGTTTTTGTACACTATTCAAGGTATTCCGGCATTGAATCCTTGGCTAACAGTCGTCACAAGATGGTCCTGGTTGAGGAGTTTCAAAGCGAGCAGTTAAACCATATCAAGTTTGCTTACATTGTATTTAACGAATTTCCCAAGGCCTTACGTGAAGCTTTCAGATCCATGTGGGACAAAAAGTATGGAAATCTACCCGGTTACCGACTTTGGGACGACTCAACTGCTGTAAGACATTTATTTCTTAGTACGGAGGGTGGAAGAACTGACGTCCCCACAAACATTCCTTATGATGAATGGGACTGCACCGCGTTGTTCAAGGCAACTATCTATGCGCGTTCCTTCGCACTAAACAGGAAAAGTCGACACTACAAGACACTGAGTGATTTGTACGTGAGTCCCCGTAAACCTTCTCACGGAAATTTTCATGTTTGCGTAAAAAGCGCAAATGGAAACAACGAAGAAACGTTTGCGTTGGCCATCGATCAACTCCGCCTTTTAAGAAATGCGCTTTGTCACTCAAACAGATCTGAGCTTGACAGAGCAACATTTGAACGTTATTTTAAATACGCCAAAGAAGCGTTTAATGCTCTTGGAGTCACCACAGTTGCTATTGATCAAGTAGAAAGTTTGCCAGAATCGATGATGGCGCGCGGAACATCGCGGATTTTGGAGCGAGGCATATTTTTCTCGTACCCAGATCTCTTGCGCTTTTTTTTTTTTCAATTCGGGACAAAAATGCGCATAGTAATTAAGCAAATTGCAAACATAGTTGCAAACGAAAGTAAGCATGTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P2G1	Ankyrin repeat and IBR domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ANKIB1 PE=1 SV=3
Q6ZPS6	Ankyrin repeat and IBR domain-containing protein 1 OS=Mus musculus OX=10090 GN=Ankib1 PE=1 SV=2
Q1L8G6	Ankyrin repeat and IBR domain-containing protein 1 OS=Danio rerio OX=7955 GN=ankib1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006522 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01485 all species →	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan
PF19422 all species →	Ariadne	Ariadne domain	Domain	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003903 all species →	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR047564 all species →	Domain	Ankyrin repeat and IBR domain-containing protein 1, Rcat domain	Interproscan
IPR031127 all species →	Family	E3 ubiquitin ligase RBR family	Interproscan
IPR002867 all species →	Domain	IBR domain	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR045840 all species →	Domain	Ariadne domain	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11685 all species →	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap11.1545_evm.model.Ap11.1567.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap11.1545_evm.model.Ap11.1567 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples

0TPM > 0

4Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole organism · cold control	14	0	0.00	0.00
whole organism · heat control	12	0	0.00	0.00
whole organism · cold challenge	12	0	0.00	0.00
whole organism · heat challenge	11	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR10674714	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674715	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674724	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674733	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674734	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674735	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674736	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674737	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674739	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674743	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674746	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674747	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674748	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674750	whole organism · cold control	whole organism	not recorded	cold control	SRP237293
SRR10674706	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674707	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674708	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674717	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674718	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674720	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674721	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674725	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674731	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674741	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674752	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674753	whole organism · heat control	whole organism	not recorded	heat control	SRP237293
SRR10674711	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674712	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674713	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674722	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674723	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674730	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674732	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674738	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674740	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674744	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674745	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674749	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293
SRR10674709	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674710	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674716	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674719	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674726	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674727	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674728	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674729	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674742	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674751	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293
SRR10674754	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.