Gene detail

Detailed information of evm.model.Ap11.1584 in Astrangia poculata

Genomic Location: Ap11:17370465...17409936
NR annotation: CAH3134000.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.1584

gctgcacattcacaccatctaaacactctgttagagcaactgttaaaggatgctgggctgtcagttgtttggaaagacactatattgcctctagtgaagagagttagtgagcaggtgacccctgatgttcgtaaagatgacgatatggatatctgtgagtatgtcaagttcaagaagattccaggaggaaacaagagtgactgtgaaatgatcagtggtgtggtatttaccaagaacattgctaataagaagatggctagcatgttgagcaaccctaaaattctggttcttagttgtgccattgattatcagcgtaatgaaaaccgcttggcatccctcgatccacttgttctccaagaatttgaatttctgaagaactttgtagcaagagtagtttctttacgacccaacattttgttggtggagaaaactgtttcacgactggcccaggacatgcttcttaaacatgggatcactctggtcctgaatgttaaaccagaagtgattgaacgcattgccagatgtacaagggcagatattctttgttccatggagcaactaagtcgaccacaactggggtcgtttcaatcattcagagttcagagatacacccttaagaatggagagtccaagacgctcatgttcatcgaaggttgtccagcagatcttggctgcactgtgaatctccgaggagggaacagtttcgtgttggctaaagtgaagcgtatttttcaacacatggtgtatgttgcttacagtttaagactagaactacactttcttatggacgaatttgccttgcctccggatactagtcatttaattgatgaatgggaagcggctgctagaaattttgaaaagaggatgaaagtggatgaaggggaattaaacggacacgaagaacttggtgaagcttgcacagaacagaagaaaaacctggcagaaaattcatcacagcaagattccagtgaaggtagtgaactttttctggcagcattaaagagcaccgttttatcaagctcgccatttctcgactatccgcttccatacttgctcacagaagcaggtagaaacatggccttaagacctactctgcctccagatatttactggtcggcacgccttgatgcacaacacaactctcatcacttaacagaggagggtttggaggagtttgatttctcaaacccacatcagcgacgcctgagtaaactggtgtgcatgttagagcctcaccctctgatgtcagcatcactgactatggaccacagtgatatattgttccaagccttggtaacagacttccgagcacagggaggacaaattcagctgaccaaaaatgggatgactgtgtccaggagccgttgcaaatggcttgaaggtgttactgagacgacagttagaaaaaccaagaaagaaaagagcagtctcccaaaaataaatgttccagaaagaacgagtgtagaagtgaaagagaagaaggatcagtttgttccaacaagtccacttcattataatagaaagtggattttggaccctatgctcatcaaagtgcagtgttgttcaaagctctccaatgaatccaaaactcacctcgtccctgcattagcccatgggccgtcttcatggagttttatggacgaaatgacatcacacttggtggttttctggaaatatactgcttcagaccttgtacatctgtcccaatccgaactggacgttcctatggtagatcactgggtaactccaattccccctgtcccctgggcatgggcgttgtcctttccaaagtatctggagctgagattctatgctggaaattacaagcgccgagcgagtgtgcaaccatgtggacactcactgcacaaggatcattatcagtactttgcttatgctaacatggtcgcctctttcaagtaccgtcctatcaaactgtttgagattgccattcctcccccacaaatttctatcaaagagaagacaagagacgccagcttttggatcaatgacctgcgtgccatggcaacaagaggagagacagtgtttgctgcattctatgatcggctggaatccttgaaggatttgtccagtcaacctgaccgccaagccaaaatacagcagtttttcgtgggactaagtgaggagcatgctcgattcttggaacaagttgaaattgtggaaaagaaagccgccagtctccaagaaccgcagaatccgctggccacggagaacatggactcatgtgaacacctgggccccgaagatagacaagcgttagagtacgtcatagcaaacagcttgaatagtctcaagaaaaccttgtgtgaagctgtagaaaactggaacaacaccctgcaagagtatgtccaagcagaaaagaagaagaacagcaagacgtcttccactaaggaaggaaagctgttgtcttcaatacaagtcgagggaaaatcaacatcagagctgacgaaatcaactgaccagctggcgatccgaagcgtggacgtgaatccccaggaaggaaatctcaatcccgcccttactccctggggatcaagatccccatcacccttccccagccctgacacaaacgaagactcgcccgaggtgctgagcggggcagacacggaggtattgcaagctaccagtggttttcgacccatcccctgcacggagaaagatgttcacacccccggggactcccccacggaaggaatcttacctgtgggaggggtggttaaggggcatcctttgcctagtgcaaaaagcgagcccttagctagggtttgtcttgagaaggatctcaccgcaagtcaaaggcatgacgccctcaaggcctttgttgtcattgagccaaaaagtgaaaaaggtcaagatagtagtgccaaagaaaatgttccgaaaatggaccctgtagataaggtaccttccgagggcaagatggacgatgcaaaggaacctggggacaagatggacgatgagaaatcaaaggcctcatctactgagaacatacagaggggaaacgaaagttacttgaagggagaaaaggaacttcctgaaggaagcaaggaggaaattaaaaacacttcgtggtacattgtcgaaggaacggatggatacggggaagaagctgccacaaacataggtgaacaaactacaaatcagcaaaaaatacccgcttctggagataaagggacagaggtgataatcgccgggaaacctttcaccctgggtcatcggagagttgcatcttcccctcctgcaattactgtatcgtcagttgaaaacgagtctttgccaggggggacaaacacttgtggtgtgacttacctagagaggagcagaagtgactctgatataagtacacatgtcaaacaagaccttgatgagtcagtgatgtcgactggaagcaacttagaaaatcttgacgaagacgacattgattcaagtgggcaaatggacaaagagaaagcagcggaaattagcgaagcagatgactctgatggagaaaggcgtatgccagtttttagaaaagtgaacacgataccactagctctgcacaggagagctgtcagtcgttcccagtcttgggcggtcaatcagtggcaatcaactgctaaaaaggctcttgccactgaaggagacccggatgctacgcctgctacagatggatcaaccggaacaagcaaacgtggaaaagtgaagcacatcatctcatcgttcatgtccagctcagcttttcaaccagttgcctcaacttttccaatccacgagcaccacctcctcccccctggggaaaaagttcttgtagtggtgagtgaaaaggagaccagttccatcattgcctatacactgagtacaaaagaatataacgaacgcttgcacgatattcagcggacgctatcagagatcaagaatggagccaccagagaacatctgcagagtaaaagtgacttcagtaaatccatggaggtatctctcaagggacagacacagcttgacattccttatggttcagagaagtacatcagagtcgattccagctcagactctaatgaaggttatgtgcatctggatatcgtgaatcccgagacgggatacgggacgggacaggacggggaaacagcgagcgggatctcagagaagttagagtttatgaacaacagtcaggaattccgagcggagcccgattcacaaacgacacatcacaacaaacacaagaaagtggaaagagtaacgttttccaagatgaaacacgctgctggtcagaaagaggatgcgaagaaggtggaaaatggtacagcacaagatagtcaggctcaagatgatattgatctcgtgcagttcggcttccaaagaaaagatgccaacccggcagtggattttcatgtcaaacatcagtttgctgacagtacttgccgattctactgcagcatttattacgcggagcaatttagacttctcagaaagaggatctttcctgacggcgaggagaagtttattcgttccctgcagcattcagtagcttggggagcccagggtggaaaatctggatcagcttttttcaaatcgtttgatgaccggtttgttatgaagcagatgtccagacaggagctgcagtgtttcttggagtttgctcctcattacttccgctacatcaataaggcgcttgatgagcagcggccgaccttgctggcaaagatgctgggcatttacagaattggttacaagaactcgcacacaagcgcgaccatgagacaagacgtgctggttatggagaacttgttctatgaccgcaaaatcgacaagacttttgatttaaaaggatccatgcgaagccgttatgttcagacttctgggccggtgaagaatgatgtgctgttggacgagaacctacttgaaatgatccgtgaatgtccgatatttatccgaccgcactccaaagcgattctttcccgcgcgattcataacgacaccgagttcctagctcagcagatggttatggactattcactattggttggcatagatgaggccaggtctgaactcgtcactggaattatagattttatccgaacattcacttgggataagaagcttgagatgtacgtgaaggcgagcggtattctggggggccaaggaagaatgcccactgtagtgtcccctgaactctacaggacacgattcaccgaggccatgcacaggtacttccttatggtccctgacaaatggaccgggcttgggaatgatctcgattaa

Transcript

evm.model.Ap11.1584

GGCTGCACATTCACACCATCTAAACACTCTGTTAGAGCAACTGTTAAAGGATGCTGGGCTGTCAGTTGTTTGGAAAGACACTATATTGCCTCTAGTGAAGAGAGTTAGTGAGCAGGTGACCCCTGATGTTCGTAAAGATGACGATATGGATATCTGTGAGTATGTCAAGTTCAAGAAGATTCCAGGAGGAAACAAGAGTGACTGTGAAATGATCAGTGGTGTGGTATTTACCAAGAACATTGCTAATAAGAAGATGGCTAGCATGTTGAGCAACCCTAAAATTCTGGTTCTTAGTTGTGCCATTGATTATCAGCGTAATGAAAACCGCTTGGCATCCCTCGATCCACTTGTTCTCCAAGAATTTGAATTTCTGAAGAACTTTGTAGCAAGAGTAGTTTCTTTACGACCCAACATTTTGTTGGTGGAGAAAACTGTTTCACGACTGGCCCAGGACATGCTTCTTAAACATGGGATCACTCTGGTCCTGAATGTTAAACCAGAAGTGATTGAACGCATTGCCAGATGTACAAGGGCAGATATTCTTTGTTCCATGGAGCAACTAAGTCGACCACAACTGGGGTCGTTTCAATCATTCAGAGTTCAGAGATACACCCTTAAGAATGGAGAGTCCAAGACGCTCATGTTCATCGAAGGTTGTCCAGCAGATCTTGGCTGCACTGTGAATCTCCGAGGAGGGAACAGTTTCGTGTTGGCTAAAGTGAAGCGTATTTTTCAACACATGGTGTATGTTGCTTACAGTTTAAGACTAGAACTACACTTTCTTATGGACGAATTTGCCTTGCCTCCGGATACTAGTCATTTAATTGATGAATGGGAAGCGGCTGCTAGAAATTTTGAAAAGAGGATGAAAGTGGATGAAGGGGAATTAAACGGACACGAAGAACTTGGTGAAGCTTGCACAGAACAGAAGAAAAACCTGGCAGAAAATTCATCACAGCAAGATTCCAGTGAAGGTAGTGAACTTTTTCTGGCAGCATTAAAGAGCACCGTTTTATCAAGCTCGCCATTTCTCGACTATCCGCTTCCATACTTGCTCACAGAAGCAGGTAGAAACATGGCCTTAAGACCTACTCTGCCTCCAGATATTTACTGGTCGGCACGCCTTGATGCACAACACAACTCTCATCACTTAACAGAGGAGGGTTTGGAGGAGTTTGATTTCTCAAACCCACATCAGCGACGCCTGAGTAAACTGGTGTGCATGTTAGAGCCTCACCCTCTGATGTCAGCATCACTGACTATGGACCACAGTGATATATTGTTCCAAGCCTTGGTAACAGACTTCCGAGCACAGGGAGGACAAATTCAGCTGACCAAAAATGGGATGACTGTGTCCAGGAGCCGTTGCAAATGGCTTGAAGGTGTTACTGAGACGACAGTTAGAAAAACCAAGAAAGAAAAGAGCAGTCTCCCAAAAATAAATGTTCCAGAAAGAACGAGTGTAGAAGTGAAAGAGAAGAAGGATCAGTTTGTTCCAACAAGTCCACTTCATTATAATAGAAAGTGGATTTTGGACCCTATGCTCATCAAAGTGCAGTGTTGTTCAAAGCTCTCCAATGAATCCAAAACTCACCTCGTCCCTGCATTAGCCCATGGGCCGTCTTCATGGAGTTTTATGGACGAAATGACATCACACTTGGTGGTTTTCTGGAAATATACTGCTTCAGACCTTGTACATCTGTCCCAATCCGAACTGGACGTTCCTATGGTAGATCACTGGGTAACTCCAATTCCCCCTGTCCCCTGGGCATGGGCGTTGTCCTTTCCAAAGTATCTGGAGCTGAGATTCTATGCTGGAAATTACAAGCGCCGAGCGAGTGTGCAACCATGTGGACACTCACTGCACAAGGATCATTATCAGTACTTTGCTTATGCTAACATGGTCGCCTCTTTCAAGTACCGTCCTATCAAACTGTTTGAGATTGCCATTCCTCCCCCACAAATTTCTATCAAAGAGAAGACAAGAGACGCCAGCTTTTGGATCAATGACCTGCGTGCCATGGCAACAAGAGGAGAGACAGTGTTTGCTGCATTCTATGATCGGCTGGAATCCTTGAAGGATTTGTCCAGTCAACCTGACCGCCAAGCCAAAATACAGCAGTTTTTCGTGGGACTAAGTGAGGAGCATGCTCGATTCTTGGAACAAGTTGAAATTGTGGAAAAGAAAGCCGCCAGTCTCCAAGAACCGCAGAATCCGCTGGCCACGGAGAACATGGACTCATGTGAACACCTGGGCCCCGAAGATAGACAAGCGTTAGAGTACGTCATAGCAAACAGCTTGAATAGTCTCAAGAAAACCTTGTGTGAAGCTGTAGAAAACTGGAACAACACCCTGCAAGAGTATGTCCAAGCAGAAAAGAAGAAGAACAGCAAGACGTCTTCCACTAAGGAAGGAAAGCTGTTGTCTTCAATACAAGTCGAGGGAAAATCAACATCAGAGCTGACGAAATCAACTGACCAGCTGGCGATCCGAAGCGTGGACGTGAATCCCCAGGAAGGAAATCTCAATCCCGCCCTTACTCCCTGGGGATCAAGATCCCCATCACCCTTCCCCAGCCCTGACACAAACGAAGACTCGCCCGAGGTGCTGAGCGGGGCAGACACGGAGGTATTGCAAGCTACCAGTGGTTTTCGACCCATCCCCTGCACGGAGAAAGATGTTCACACCCCCGGGGACTCCCCCACGGAAGGAATCTTACCTGTGGGAGGGGTGGTTAAGGGGCATCCTTTGCCTAGTGCAAAAAGCGAGCCCTTAGCTAGGGTTTGTCTTGAGAAGGATCTCACCGCAAGTCAAAGGCATGACGCCCTCAAGGCCTTTGTTGTCATTGAGCCAAAAAGTGAAAAAGGTCAAGATAGTAGTGCCAAAGAAAATGTTCCGAAAATGGACCCTGTAGATAAGGTACCTTCCGAGGGCAAGATGGACGATGCAAAGGAACCTGGGGACAAGATGGACGATGAGAAATCAAAGGCCTCATCTACTGAGAACATACAGAGGGGAAACGAAAGTTACTTGAAGGGAGAAAAGGAACTTCCTGAAGGAAGCAAGGAGGAAATTAAAAACACTTCGTGGTACATTGTCGAAGGAACGGATGGATACGGGGAAGAAGCTGCCACAAACATAGGTGAACAAACTACAAATCAGCAAAAAATACCCGCTTCTGGAGATAAAGGGACAGAGGTGATAATCGCCGGGAAACCTTTCACCCTGGGTCATCGGAGAGTTGCATCTTCCCCTCCTGCAATTACTGTATCGTCAGTTGAAAACGAGTCTTTGCCAGGGGGGACAAACACTTGTGGTGTGACTTACCTAGAGAGGAGCAGAAGTGACTCTGATATAAGTACACATGTCAAACAAGACCTTGATGAGTCAGTGATGTCGACTGGAAGCAACTTAGAAAATCTTGACGAAGACGACATTGATTCAAGTGGGCAAATGGACAAAGAGAAAGCAGCGGAAATTAGCGAAGCAGATGACTCTGATGGAGAAAGGCGTATGCCAGTTTTTAGAAAAGTGAACACGATACCACTAGCTCTGCACAGGAGAGCTGTCAGTCGTTCCCAGTCTTGGGCGGTCAATCAGTGGCAATCAACTGCTAAAAAGGCTCTTGCCACTGAAGGAGACCCGGATGCTACGCCTGCTACAGATGGATCAACCGGAACAAGCAAACGTGGAAAAGTGAAGCACATCATCTCATCGTTCATGTCCAGCTCAGCTTTTCAACCAGTTGCCTCAACTTTTCCAATCCACGAGCACCACCTCCTCCCCCCTGGGGAAAAAGTTCTTGTAGTGGTGAGTGAAAAGGAGACCAGTTCCATCATTGCCTATACACTGAGTACAAAAGAATATAACGAACGCTTGCACGATATTCAGCGGACGCTATCAGAGATCAAGAATGGAGCCACCAGAGAACATCTGCAGAGTAAAAGTGACTTCAGTAAATCCATGGAGGTATCTCTCAAGGGACAGACACAGCTTGACATTCCTTATGGTTCAGAGAAGTACATCAGAGTCGATTCCAGCTCAGACTCTAATGAAGGTTATGTGCATCTGGATATCGTGAATCCCGAGACGGGATACGGGACGGGACAGGACGGGGAAACAGCGAGCGGGATCTCAGAGAAGTTAGAGTTTATGAACAACAGTCAGGAATTCCGAGCGGAGCCCGATTCACAAACGACACATCACAACAAACACAAGAAAGTGGAAAGAGTAACGTTTTCCAAGATGAAACACGCTGCTGGTCAGAAAGAGGATGCGAAGAAGGTGGAAAATGGTACAGCACAAGATAGTCAGGCTCAAGATGATATTGATCTCGTGCAGTTCGGCTTCCAAAGAAAAGATGCCAACCCGGCAGTGGATTTTCATGTCAAACATCAGTTTGCTGACAGTACTTGCCGATTCTACTGCAGCATTTATTACGCGGAGCAATTTAGACTTCTCAGAAAGAGGATCTTTCCTGACGGCGAGGAGAAGTTTATTCGTTCCCTGCAGCATTCAGTAGCTTGGGGAGCCCAGGGTGGAAAATCTGGATCAGCTTTTTTCAAATCGTTTGATGACCGGTTTGTTATGAAGCAGATGTCCAGACAGGAGCTGCAGTGTTTCTTGGAGTTTGCTCCTCATTACTTCCGCTACATCAATAAGGCGCTTGATGAGCAGCGGCCGACCTTGCTGGCAAAGATGCTGGGCATTTACAGAATTGGTTACAAGAACTCGCACACAAGCGCGACCATGAGACAAGACGTGCTGGTTATGGAGAACTTGTTCTATGACCGCAAAATCGACAAGACTTTTGATTTAAAAGGATCCATGCGAAGCCGTTATGTTCAGACTTCTGGGCCGGTGAAGAATGATGTGCTGTTGGACGAGAACCTACTTGAAATGATCCGTGAATGTCCGATATTTATCCGACCGCACTCCAAAGCGATTCTTTCCCGCGCGATTCATAACGACACCGAGTTCCTAGCTCAGCAGATGGTTATGGACTATTCACTATTGGTTGGCATAGATGAGGCCAGGTCTGAACTCGTCACTGGAATTATAGATTTTATCCGAACATTCACTTGGGATAAGAAGCTTGAGATGTACGTGAAGGCGAGCGGTATTCTGGGGGGCCAAGGAAGAATGCCCACTGTAGTGTCCCCTGAACTCTACAGGACACGATTCACCGAGGCCATGCACAGGTACTTCCTTATGGTCCCTGACAAATGGACCGGGCTTGGGAATGATCTCGATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z1T6	1-phosphatidylinositol 3-phosphate 5-kinase OS=Mus musculus OX=10090 GN=Pikfyve PE=1 SV=3
Q9Y2I7	1-phosphatidylinositol 3-phosphate 5-kinase OS=Homo sapiens OX=9606 GN=PIKFYVE PE=1 SV=3
O96838	Putative 1-phosphatidylinositol 3-phosphate 5-kinase OS=Drosophila melanogaster OX=7227 GN=fab1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002213 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan
PF01504 all species →	PIP5K	Phosphatidylinositol-4-phosphate 5-Kinase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027483 all species →	Homologous_superfamily	Phosphatidylinositol-4-phosphate 4/5-kinase, C-terminal domain superfamily	Interproscan
IPR002498 all species →	Domain	Phosphatidylinositol-4-phosphate 4/5-kinase, core	Interproscan
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR044769 all species →	Domain	1-phosphatidylinositol-3-phosphate 5-kinase, PIPK catalytic domain	Interproscan
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR027484 all species →	Homologous_superfamily	Phosphatidylinositol-4-phosphate 5-kinase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45748 all species →	1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046488 all species →	Biological Process	phosphatidylinositol metabolic process	Interproscan
GO:0052742 all species →	Molecular Function	phosphatidylinositol kinase activity	Interproscan
GO:0000285 all species →	Molecular Function	1-phosphatidylinositol-3-phosphate 5-kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0010008 all species →	Cellular Component	endosome membrane	Interproscan
GO:0046854 all species →	Biological Process	phosphatidylinositol phosphate biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00921	PIKFYVE, FAB1; 1-phosphatidylinositol-3-phosphate 5-kinase	EC:2.7.1.150	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.