Gene detail

Detailed information of evm.model.Ap11.159_evm.model.Ap11.139_evm.model.Ap11.140_evm.model.Ap11.148 in Astrangia poculata

Genomic Location: Ap11:1866616...2004213
NR annotation: CAH3022032.1, unnamed protein product [Porites evermanni]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.159_evm.model.Ap11.139_evm.model.Ap11.140_evm.model.Ap11.148

atggccgccgctcctgacccagatgaagtgctccgttcaacaagaggaaaaggaaattttcaacgtgtggcacggcttttaataagtggaggtaccacactactgagagaggtttttgatcagatttgcccaccaagtaaccttcccgcaatactaaaaaatccagccatagagaaacaactcaaagcagcaaagctcaccaagccacagtgggactgtctttacccttccccaggggtgtacggcaagtctgaagattgtgatgttacattgctctttaagttgctgagaacaatatgcaacctcataccccctgtcacgggctgggatgccctgccaacgagaacagaccacagtttaacagccgatttggcgagaattaaatattaccgcaactcagtgtatggtcacgtgaaccaaaacatggagataactgaagacgagtttccatctctttggcagaacgttaccgaagcactagtgagaattgcgggacaaattagtcatgcaaagaagcaagaatggcagaaggccattgatgcatttttaagagatcctctcacagctgaggatgaaagaaatgcacaagaactgttgaggtggtatgaaaacgacacagacgttaagcaatccctagaaaagtttaagacgtcgactcaagaagggatgaaacgtttgaagagaagtttagaaggtgttcagagcggacaaaagcaaatgaaacgtgttatggtgaagaaagctaaaattgtagagactgcagttcgagacgaagcccaagataccaaagatcagcttaaagaagaattgaaaagtacaacacaagaagtacaaaacctagagaaagcagttcatgaagaagcccaagacatcaaggatcagcttggaggggaactaaaaaccacagctcaaaacgtccaatacctagttcgagatgaagcccaagacatcaaggataagcttgatgaggtgcatcaatccatagatggactccgttccacagctggcagctctcaaacatctggagttcaaattcgagtacgaatggattgtgaggccatccctggcgctggtgctagaggaagagcttcagaaatagtgacaacctcacgggaaccacaaccaagtgtccagagcgaaaccgcaatgccggttacaccctaccaacagcaagcatcgcccacagtaggttttggaggagaaaatgtcgcagaccttcttcccacacaaggagttttgaatttcatcgcgtacaagtactttcaggctgttaacccatcgaatccggaggagttaaatggttatctacagtatctgagagacgtgcgcaatgtcctcatcgtggacactcagcaagggagcttgataatcactctggaatgtagttctttggagatacttgaagaactatgggaagactattgttcaggtcacttgaatgaaatggcacaaaaattccttgtgacagaagaagtcctgagagagtttggactgatcgcagtgaaattgacgaccaggattctggtggaggaatacttagcttgtcgacagtatttctttcagagtgaagctcatctcacacgacacatgacaatttttgtcaacacgccaactggaaacaccgttatcacatttgacgttgtaccagatgataccatcaataatgtgaaaaagaaaataaaggatgagatagggataccggccgttcagcaagaactcacctttgacgacaagaaactcaaaggtgagcaaactttgaattactacaacattcaggaagaatcaacactacatttgacccttagacatcattaccataacctgcgacttttcgtgaagacgcagactggaaagaccatgattacactaaatgctgcgccatatgatactattcagacattgaaggagaaaataatggacgagttaggaataccagttgaccagcaagagctcaccattaatgcaaggaaactcaaagattttcactctttgaaaaactacaacattaagaaagactctatcctacatttggccttaagacagcgtgctgatcacatgcaacttttcgtacagaggcaaactagaaagaaaaaaacgaaaagaaaaaaacagaccgtaatcacattagacgtcgtaccacatgatactctcctagctgtgagggagaaaataatggataagataggactggcggttaaccagcagcaactcacctttgccggaaggacacttgaagatagtcgcactctgaaagactacaacattcagagaggatcaacccttcacttgagtcaactagttaacaagagcatgcaaattttcgtcaagacgccgacaaggagggaggtcagtttggaagctgaaccgaaagcttcaatcagggatgtgaagaagaaaattgaaaacaaagggatcccacctgacgaccaatctctcatttgtgctggccaagagcttaaagacgaccgcactttggaggatttccaaaccaagaatgaatcaaccctagaattgccccctctacgacattggcaaatcttcatcaagttgccgaggactgagaaggcgatacctttgacagtcaaaccagacacgtccatcagaaatgtgaaagagaaaattcaagacaaagaagggatctctactaaccaacaacatctcatctttgagtatcgggaactcaaaaacgagcgcaggttaagggattataacattgaagaacattccgtcctgtatttaacacttgacgaactgtgtgaaatgatgcaaatttatgtgatcgtgccgactggaacggcaactattttagatgtttcatcgagcgatgatgtcgagaaggtcaaacagaaaatttacagcgaaacagggatcccacccaacgaacagtgtctcacctttgatggtaaggaactaaaatttggcagtctgactgactacaacattaaaaacgaatcaattctacgcttggttcgtcggcttccacttgtcaatcagaactttattaagttgccgattggcttacatgtttga

Transcript

evm.model.Ap11.159_evm.model.Ap11.139_evm.model.Ap11.140_evm.model.Ap11.148

ATGGCCGCCGCTCCTGACCCAGATGAAGTGCTCCGTTCAACAAGAGGAAAAGGAAATTTTCAACGTGTGGCACGGCTTTTAATAAGTGGAGGTACCACACTACTGAGAGAGGTTTTTGATCAGATTTGCCCACCAAGTAACCTTCCCGCAATACTAAAAAATCCAGCCATAGAGAAACAACTCAAAGCAGCAAAGCTCACCAAGCCACAGTGGGACTGTCTTTACCCTTCCCCAGGGGTGTACGGCAAGTCTGAAGATTGTGATGTTACATTGCTCTTTAAGTTGCTGAGAACAATATGCAACCTCATACCCCCTGTCACGGGCTGGGATGCCCTGCCAACGAGAACAGACCACAGTTTAACAGCCGATTTGGCGAGAATTAAATATTACCGCAACTCAGTGTATGGTCACGTGAACCAAAACATGGAGATAACTGAAGACGAGTTTCCATCTCTTTGGCAGAACGTTACCGAAGCACTAGTGAGAATTGCGGGACAAATTAGTCATGCAAAGAAGCAAGAATGGCAGAAGGCCATTGATGCATTTTTAAGAGATCCTCTCACAGCTGAGGATGAAAGAAATGCACAAGAACTGTTGAGGTGGTATGAAAACGACACAGACGTTAAGCAATCCCTAGAAAAGTTTAAGACGTCGACTCAAGAAGGGATGAAACGTTTGAAGAGAAGTTTAGAAGGTGTTCAGAGCGGACAAAAGCAAATGAAACGTGTTATGGTGAAGAAAGCTAAAATTGTAGAGACTGCAGTTCGAGACGAAGCCCAAGATACCAAAGATCAGCTTAAAGAAGAATTGAAAAGTACAACACAAGAAGTACAAAACCTAGAGAAAGCAGTTCATGAAGAAGCCCAAGACATCAAGGATCAGCTTGGAGGGGAACTAAAAACCACAGCTCAAAACGTCCAATACCTAGTTCGAGATGAAGCCCAAGACATCAAGGATAAGCTTGATGAGGTGCATCAATCCATAGATGGACTCCGTTCCACAGCTGGCAGCTCTCAAACATCTGGAGTTCAAATTCGAGTACGAATGGATTGTGAGGCCATCCCTGGCGCTGGTGCTAGAGGAAGAGCTTCAGAAATAGTGACAACCTCACGGGAACCACAACCAAGTGTCCAGAGCGAAACCGCAATGCCGGTTACACCCTACCAACAGCAAGCATCGCCCACAGTAGGTTTTGGAGGAGAAAATGTCGCAGACCTTCTTCCCACACAAGGAGTTTTGAATTTCATCGCGTACAAGTACTTTCAGGCTGTTAACCCATCGAATCCGGAGGAGTTAAATGGTTATCTACAGTATCTGAGAGACGTGCGCAATGTCCTCATCGTGGACACTCAGCAAGGGAGCTTGATAATCACTCTGGAATGTAGTTCTTTGGAGATACTTGAAGAACTATGGGAAGACTATTGTTCAGGTCACTTGAATGAAATGGCACAAAAATTCCTTGTGACAGAAGAAGTCCTGAGAGAGTTTGGACTGATCGCAGTGAAATTGACGACCAGGATTCTGGTGGAGGAATACTTAGCTTGTCGACAGTATTTCTTTCAGAGTGAAGCTCATCTCACACGACACATGACAATTTTTGTCAACACGCCAACTGGAAACACCGTTATCACATTTGACGTTGTACCAGATGATACCATCAATAATGTGAAAAAGAAAATAAAGGATGAGATAGGGATACCGGCCGTTCAGCAAGAACTCACCTTTGACGACAAGAAACTCAAAGGTGAGCAAACTTTGAATTACTACAACATTCAGGAAGAATCAACACTACATTTGACCCTTAGACATCATTACCATAACCTGCGACTTTTCGTGAAGACGCAGACTGGAAAGACCATGATTACACTAAATGCTGCGCCATATGATACTATTCAGACATTGAAGGAGAAAATAATGGACGAGTTAGGAATACCAGTTGACCAGCAAGAGCTCACCATTAATGCAAGGAAACTCAAAGATTTTCACTCTTTGAAAAACTACAACATTAAGAAAGACTCTATCCTACATTTGGCCTTAAGACAGCGTGCTGATCACATGCAACTTTTCGTACAGAGGCAAACTAGAAAGAAAAAAACGAAAAGAAAAAAACAGACCGTAATCACATTAGACGTCGTACCACATGATACTCTCCTAGCTGTGAGGGAGAAAATAATGGATAAGATAGGACTGGCGGTTAACCAGCAGCAACTCACCTTTGCCGGAAGGACACTTGAAGATAGTCGCACTCTGAAAGACTACAACATTCAGAGAGGATCAACCCTTCACTTGAGTCAACTAGTTAACAAGAGCATGCAAATTTTCGTCAAGACGCCGACAAGGAGGGAGGTCAGTTTGGAAGCTGAACCGAAAGCTTCAATCAGGGATGTGAAGAAGAAAATTGAAAACAAAGGGATCCCACCTGACGACCAATCTCTCATTTGTGCTGGCCAAGAGCTTAAAGACGACCGCACTTTGGAGGATTTCCAAACCAAGAATGAATCAACCCTAGAATTGCCCCCTCTACGACATTGGCAAATCTTCATCAAGTTGCCGAGGACTGAGAAGGCGATACCTTTGACAGTCAAACCAGACACGTCCATCAGAAATGTGAAAGAGAAAATTCAAGACAAAGAAGGGATCTCTACTAACCAACAACATCTCATCTTTGAGTATCGGGAACTCAAAAACGAGCGCAGGTTAAGGGATTATAACATTGAAGAACATTCCGTCCTGTATTTAACACTTGACGAACTGTGTGAAATGATGCAAATTTATGTGATCGTGCCGACTGGAACGGCAACTATTTTAGATGTTTCATCGAGCGATGATGTCGAGAAGGTCAAACAGAAAATTTACAGCGAAACAGGGATCCCACCCAACGAACAGTGTCTCACCTTTGATGGTAAGGAACTAAAATTTGGCAGTCTGACTGACTACAACATTAAAAACGAATCAATTCTACGCTTGGTTCGTCGGCTTCCACTTGTCAATCAGAACTTTATTAAGTTGCCGATTGGCTTACATGTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0CG68	Polyubiquitin-C OS=Sus scrofa OX=9823 GN=UBC PE=2 SV=1
P0CG66	Polyubiquitin-C OS=Gorilla gorilla gorilla OX=9595 GN=UBC PE=3 SV=1
P62976	Polyubiquitin OS=Cricetulus griseus OX=10029 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000498 (this species only)
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF20694 all species →	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan
PF18738 all species →	HEPN_DZIP3	DZIP3/ hRUL138-like HEPN	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR050158 all species →	Family	Ubiquitin and ubiquitin-like	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR049341 all species →	Domain	TRADD-like N-terminal domain	Interproscan
IPR041249 all species →	Domain	DZIP3-like HEPN domain	Interproscan
IPR019956 all species →	Domain	Ubiquitin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10666 all species →	UBIQUITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0019941 all species →	Biological Process	modification-dependent protein catabolic process	Interproscan
GO:0031386 all species →	Molecular Function	protein tag activity	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap11.159_evm.model.Ap11.139_evm.model.Ap11.140_evm.model.Ap11.148.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.