Detailed information of evm.model.Ap11.159_evm.model.Ap11.139_evm.model.Ap11.140_evm.model.Ap11.148.1.5f1685b5 in Astrangia poculata

Genomic Location: Ap11:1895991...2004213
NR annotation: XP_020616797.1, uncharacterized protein LOC110054780 isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P38146GTP-binding protein YPT10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YPT10 PE=1 SV=2
P36409Ras-related protein Rab-2A OS=Dictyostelium discoideum OX=44689 GN=rab2A PE=2 SV=2
Q559X6Ras-related protein Rab-2B OS=Dictyostelium discoideum OX=44689 GN=rab2B PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000923 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00071
all species →		RasRas familyDomainInterproscan
PF20694
all species →		TRADD-like_NTRADD-like N-terminal domainDomainInterproscan
PF18738
all species →		HEPN_DZIP3DZIP3/ hRUL138-like HEPNDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005225
all species →		DomainSmall GTP-binding protein domainInterproscan
IPR001806
all species →		FamilySmall GTPaseInterproscan
IPR050227
all species →		FamilyRas-related protein RabInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR049341
all species →		DomainTRADD-like N-terminal domainInterproscan
IPR041249
all species →		DomainDZIP3-like HEPN domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47977
all species →		RAS-RELATED PROTEIN RABInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005525
all species →		Molecular FunctionGTP bindingInterproscan
GO:0003924
all species →		Molecular FunctionGTPase activityInterproscan
GO:0016192
all species →		Biological Processvesicle-mediated transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap11.159_evm.model.Ap11.139_evm.model.Ap11.140_evm.model.Ap11.148.1.5f1685b5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap11.159_evm.model.Ap11.139_evm.model.Ap11.140_evm.model.Ap11.148.1.5f1685b5 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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