Detailed information of evm.model.Ap11.159_evm.model.Ap11.139_evm.model.Ap11.140_evm.model.Ap11.148.2.5f1685b5 in Astrangia poculata

Genomic Location: Ap11:1993327...2004213
NR annotation: XP_020616797.1, uncharacterized protein LOC110054780 isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q86JC8Ras-related protein RabH OS=Dictyostelium discoideum OX=44689 GN=rabH PE=3 SV=1
Q54KM9Ras-related protein Rab-11B OS=Dictyostelium discoideum OX=44689 GN=rab11B PE=2 SV=1
Q9BZG1Ras-related protein Rab-34 OS=Homo sapiens OX=9606 GN=RAB34 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000923 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20694
all species →		TRADD-like_NTRADD-like N-terminal domainDomainInterproscan
PF18738
all species →		HEPN_DZIP3DZIP3/ hRUL138-like HEPNDomainInterproscan
PF00071
all species →		RasRas familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR049341
all species →		DomainTRADD-like N-terminal domainInterproscan
IPR041249
all species →		DomainDZIP3-like HEPN domainInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR050227
all species →		FamilyRas-related protein RabInterproscan
IPR005225
all species →		DomainSmall GTP-binding protein domainInterproscan
IPR001806
all species →		FamilySmall GTPaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47977
all species →		RAS-RELATED PROTEIN RABInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016192
all species →		Biological Processvesicle-mediated transportInterproscan
GO:0005525
all species →		Molecular FunctionGTP bindingInterproscan
GO:0003924
all species →		Molecular FunctionGTPase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap11.159_evm.model.Ap11.139_evm.model.Ap11.140_evm.model.Ap11.148.2.5f1685b5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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