Gene detail

Detailed information of evm.model.Ap11.1600 in Astrangia poculata

Genomic Location: Ap11:17536048...17546447
NR annotation: XP_020627624.1, uncharacterized protein LOC110064862 isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.1600

atgagtctttttttctctgactgtggaataacgaaagatcgcctcggcgtttcaaatccaacgtcacgtgagaaacttctggccgccgttcacgaactgaagctgttcggaggaccgataccggacgaaaggcagtttcgcctaaatgtcccaggcacgaataacagggtggccagtccacgaacaaagaggaggtcccttcctaccaggcccgccaatatgcaacaacttatgaaaggaatattacctgacaccacagagaaagggaattcttccttgaggggtttggatgtggtggaacgaaaaactccgcaggaagttcttcacgagcaagctgaggaaatgatgtctgaaacagaaaaggggaacgttcaagtgcagacaacagtgttaaaccctgatgcagaatacacgagtatcgaaatcacaaaccggacaacaagtaaagagcttgtccgtttgcttctggggcagtgcgatgctctgtctaaggattataatctattttacatagcagtggaaattggaattcaaaagaaagattctggccttcccatatcccacatgatggtattggccgatgatgctcgtcctctggagatccaatcccggcaaccaacgggggaagccaagtttcatcttaagatgagaagtggaggactattacgtgttcaagctggaattctaagccccggggcaacttacaaatgtgtacagatatctcgtcaaaccagagccgatgatgtcgttaagatgattttgtccagttatggcagtgatgagccgcctgagaagtttgttctcgtggaaagtttgtcagattcagaagttggtcgtattcttgaggcagacgagtgtcctcttgaagtgcagtctcggtggaaggcaggagaacagggaacgtttactttaacactagcagaatttgagggcgttcttcagggtgacgagaagactaaactaactgaacaagaatcattcagcgataagagcataagtagcgaccaacaatcaagttcatttgaaatggaagagaaggaaaatttggagcaagttcgaaagcgtagaacttcaatagacgcattggatctacacatagatctccatacagtgaattcatctcaagttaaaagaaaagtgtcacagattgacaatttgagacataaattccaggaataccaccattctggcttgcacaggaaacccagtagcacacgctccgtcgaagaattagacgaaggaccgaagaagcgtaaagtttcacagattgatgtttttagaagtaaatttcttgcgtattacggtggtaaaatggagggtcccggtgttcttgatatattgagtgaaaatgttaagactggagaaagtaatgtcaaacttagaagcagaaagacatcaccgccattgcaaacaacttcatgtgaacattctgatggcgaggagctgcctcgtttctcttcttcgccgccaactttcctttgtgataataataacaacaaagacagcgcttcacagcaaagcgtcgaaagtgaacagaaagataatgaattagtttctaagaaatctcaatcatctcgccttagtttagctagtgttcttcaacattccaaacttataacggtgactctgaacaggagcccgggagaaggctggggcatagagctcgttcatgtaacccaaacaggttcctcgatgggccaggacgagagtggcacgaaagacgaggagaaagtggtttacgttcaacacaacggaaatggacagaactcaattatgagcacatcatgcgctggagatatcagcagcgagttgcatacgccgtctgggacaagcacgcctcgctcaggaagttcctcgggttcaagcgaacacgaaatagcaattattctaggaacaacttctcactcaagcgctgacatcaacaagcccatcgatgacatgcgccacatcgtacataaacataacttgcgtagaaaaatgggatctattacaaatgttcatctcactaccgaaggaagtcccatttcatcgaggcctggctcggcatatcatttaagacccattaatccccttccaccgcgaccgtcttctgcgcttgcgcagtggagaaaggagggaagtcctcagcatcgccctggcgtgcgcattgttgcactgactgttgatggggtagcggaaaggagcaatgaacttgctgtggatgacttgataattgagattaatggacagttcgtgctcaactctccactcgaacctgtcatcgctgcaatgaaagaagccaacacagtaaccgttgtggtggctagagcccagtctcctgagccaaaacccgaagaaaaagagaacaaaacagattacaaagatgacatcaaagccttgacgctacagatacaaaatcttgtgacaaaagtcagcgaaatgcagagtgacttgaaaaaaaaggacgacaaaataaaaaccttgaagaaaatagtcaagaaaggcggcttggacagcaaagggaaaatttaccagtctgttcaagttcttgtgtaa

Transcript

evm.model.Ap11.1600

ATGAGTCTTTTTTTCTCTGACTGTGGAATAACGAAAGATCGCCTCGGCGTTTCAAATCCAACGTCACGTGAGAAACTTCTGGCCGCCGTTCACGAACTGAAGCTGTTCGGAGGACCGATACCGGACGAAAGGCAGTTTCGCCTAAATGTCCCAGGCACGAATAACAGGGTGGCCAGTCCACGAACAAAGAGGAGGTCCCTTCCTACCAGGCCCGCCAATATGCAACAACTTATGAAAGGAATATTACCTGACACCACAGAGAAAGGGAATTCTTCCTTGAGGGGTTTGGATGTGGTGGAACGAAAAACTCCGCAGGAAGTTCTTCACGAGCAAGCTGAGGAAATGATGTCTGAAACAGAAAAGGGGAACGTTCAAGTGCAGACAACAGTGTTAAACCCTGATGCAGAATACACGAGTATCGAAATCACAAACCGGACAACAAGTAAAGAGCTTGTCCGTTTGCTTCTGGGGCAGTGCGATGCTCTGTCTAAGGATTATAATCTATTTTACATAGCAGTGGAAATTGGAATTCAAAAGAAAGATTCTGGCCTTCCCATATCCCACATGATGGTATTGGCCGATGATGCTCGTCCTCTGGAGATCCAATCCCGGCAACCAACGGGGGAAGCCAAGTTTCATCTTAAGATGAGAAGTGGAGGACTATTACGTGTTCAAGCTGGAATTCTAAGCCCCGGGGCAACTTACAAATGTGTACAGATATCTCGTCAAACCAGAGCCGATGATGTCGTTAAGATGATTTTGTCCAGTTATGGCAGTGATGAGCCGCCTGAGAAGTTTGTTCTCGTGGAAAGTTTGTCAGATTCAGAAGTTGGTCGTATTCTTGAGGCAGACGAGTGTCCTCTTGAAGTGCAGTCTCGGTGGAAGGCAGGAGAACAGGGAACGTTTACTTTAACACTAGCAGAATTTGAGGGCGTTCTTCAGGGTGACGAGAAGACTAAACTAACTGAACAAGAATCATTCAGCGATAAGAGCATAAGTAGCGACCAACAATCAAGTTCATTTGAAATGGAAGAGAAGGAAAATTTGGAGCAAGTTCGAAAGCGTAGAACTTCAATAGACGCATTGGATCTACACATAGATCTCCATACAGTGAATTCATCTCAAGTTAAAAGAAAAGTGTCACAGATTGACAATTTGAGACATAAATTCCAGGAATACCACCATTCTGGCTTGCACAGGAAACCCAGTAGCACACGCTCCGTCGAAGAATTAGACGAAGGACCGAAGAAGCGTAAAGTTTCACAGATTGATGTTTTTAGAAGTAAATTTCTTGCGTATTACGGTGGTAAAATGGAGGGTCCCGGTGTTCTTGATATATTGAGTGAAAATGTTAAGACTGGAGAAAGTAATGTCAAACTTAGAAGCAGAAAGACATCACCGCCATTGCAAACAACTTCATGTGAACATTCTGATGGCGAGGAGCTGCCTCGTTTCTCTTCTTCGCCGCCAACTTTCCTTTGTGATAATAATAACAACAAAGACAGCGCTTCACAGCAAAGCGTCGAAAGTGAACAGAAAGATAATGAATTAGTTTCTAAGAAATCTCAATCATCTCGCCTTAGTTTAGCTAGTGTTCTTCAACATTCCAAACTTATAACGGTGACTCTGAACAGGAGCCCGGGAGAAGGCTGGGGCATAGAGCTCGTTCATGTAACCCAAACAGGTTCCTCGATGGGCCAGGACGAGAGTGGCACGAAAGACGAGGAGAAAGTGGTTTACGTTCAACACAACGGAAATGGACAGAACTCAATTATGAGCACATCATGCGCTGGAGATATCAGCAGCGAGTTGCATACGCCGTCTGGGACAAGCACGCCTCGCTCAGGAAGTTCCTCGGGTTCAAGCGAACACGAAATAGCAATTATTCTAGGAACAACTTCTCACTCAAGCGCTGACATCAACAAGCCCATCGATGACATGCGCCACATCGTACATAAACATAACTTGCGTAGAAAAATGGGATCTATTACAAATGTTCATCTCACTACCGAAGGAAGTCCCATTTCATCGAGGCCTGGCTCGGCATATCATTTAAGACCCATTAATCCCCTTCCACCGCGACCGTCTTCTGCGCTTGCGCAGTGGAGAAAGGAGGGAAGTCCTCAGCATCGCCCTGGCGTGCGCATTGTTGCACTGACTGTTGATGGGGTAGCGGAAAGGAGCAATGAACTTGCTGTGGATGACTTGATAATTGAGATTAATGGACAGTTCGTGCTCAACTCTCCACTCGAACCTGTCATCGCTGCAATGAAAGAAGCCAACACAGTAACCGTTGTGGTGGCTAGAGCCCAGTCTCCTGAGCCAAAACCCGAAGAAAAAGAGAACAAAACAGATTACAAAGATGACATCAAAGCCTTGACGCTACAGATACAAAATCTTGTGACAAAAGTCAGCGAAATGCAGAGTGACTTGAAAAAAAAGGACGACAAAATAAAAACCTTGAAGAAAATAGTCAAGAAAGGCGGCTTGGACAGCAAAGGGAAAATTTACCAGTCTGTTCAAGTTCTTGTGTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007008 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21298 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0045742 all species →	Biological Process	positive regulation of epidermal growth factor receptor signaling pathway	Interproscan
GO:0045743 all species →	Biological Process	positive regulation of fibroblast growth factor receptor signaling pathway	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap11.1600.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.