Detailed information of evm.model.Ap11.1607 in Astrangia poculata

Genomic Location: Ap11:17629984...17642769
NR annotation: XP_020626164.1, 5'-3' exoribonuclease 2-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9DBR15'-3' exoribonuclease 2 OS=Mus musculus OX=10090 GN=Xrn2 PE=1 SV=1
Q5ZIP45'-3' exoribonuclease 2 OS=Gallus gallus OX=9031 GN=XRN2 PE=2 SV=1
Q5R4L55'-3' exoribonuclease 2 OS=Pongo abelii OX=9601 GN=XRN2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001148 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17846
all species →		XRN_MXrn1 helical domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027073
all species →		Family5'-3' exoribonucleaseInterproscan
IPR041412
all species →		DomainXrn1, helical domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12341
all species →		5'->3' EXORIBONUCLEASEInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap11.1607. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12619XRN2, RAT1; 5'-3' exoribonuclease 2EC:3.1.13.-
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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