Gene detail

Detailed information of evm.model.Ap11.1644 in Astrangia poculata

Genomic Location: Ap11:18040550...18044362
NR annotation: CAH3018753.1, unnamed protein product [Porites evermanni]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NWF4	Vacuolar protein-sorting-associated protein 25 OS=Danio rerio OX=7955 GN=vps25 PE=2 SV=2
Q6AX45	Vacuolar protein-sorting-associated protein 25 OS=Xenopus laevis OX=8355 GN=vps25 PE=2 SV=1
Q9CQ80	Vacuolar protein-sorting-associated protein 25 OS=Mus musculus OX=10090 GN=Vps25 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008224 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05871 all species →	ESCRT-II	ESCRT-II complex subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR008570 all species →	Family	ESCRT-II complex, Vps25 subunit	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR014041 all species →	Homologous_superfamily	ESCRT-II complex, Vps25 subunit, N-terminal winged helix	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13149 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000814 all species →	Cellular Component	ESCRT II complex	Interproscan
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0042803 all species →	Molecular Function	protein homodimerization activity	Interproscan
GO:0043328 all species →	Biological Process	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan
GO:0071985 all species →	Biological Process	multivesicular body sorting pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12189	VPS25, EAP20; ESCRT-II complex subunit VPS25	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.