Genomic Location: Ap11:18045578...18051962
NR annotation: XP_020626143.1, diphthine--ammonia ligase-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap11.1645 |
| Transcript |
| evm.model.Ap11.1645 |
| Protein |
| evm.model.Ap11.1645 |
| UniProt accession | Description |
|---|---|
| O58584 | RutC family protein PH0854 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=PH0854 PE=1 SV=2 |
| Q8U308 | 2-iminobutanoate/2-iminopropanoate deaminase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=ridA PE=1 SV=1 |
| Q10121 | RutC family protein C23G10.2 OS=Caenorhabditis elegans OX=6239 GN=C23G10.2 PE=3 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003404 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01042 all species → | Ribonuc_L-PSP | Endoribonuclease L-PSP | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035959 all species → | Homologous_superfamily | RutC-like superfamily | Interproscan |
| IPR030662 all species → | Family | Diphthine--ammonia ligase/Uncharacterised protein MJ0570 | Interproscan |
| IPR006175 all species → | Family | YjgF/YER057c/UK114 family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12196 all species → | DOMAIN OF UNKNOWN FUNCTION 71 DUF71 -CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0017178 all species → | Molecular Function | diphthine-ammonia ligase activity | Interproscan |
| GO:0017183 all species → | Biological Process | protein histidyl modification to diphthamide | Interproscan |
evm.model.Ap11.1645.Transcript abundance of evm.model.Ap11.1645 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
