Gene detail

Detailed information of evm.model.Ap11.1667_evm.model.Ap11.1672 in Astrangia poculata

Genomic Location: Ap11:18214916...18297987
NR annotation: KAJ7392054.1, Ubiquitin carboxyl-terminal hydrolase 37 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.1667_evm.model.Ap11.1672

atggcggcctgtgtactcgatggagataaactttgtgaggttgctggcaacgtcaaatggtccagtgtggatcgttgtatgatggactatcatcatggatcattagctctttacaagctcagtagcagttattacattcatgcgataacagctataaaacgagctaagcctctcaacagtgttcctaacttgggatcctggttcgactctaacatgtccatgtccatgcacattggcaagacctgtagtaaagcttttcatgggttgtacaacatacgacaaatcaggaaatttctcagccctgagtcaacgaagactctagtccacgcatttgtaacttcacacttggactactgcaactctcttctctttggagttccaaagtaccagacagattgtctgcagaagtttccgttaaaaccagataaatttaacctcctcagccgcgagtcacggttaactttgtcattatcagccgatgccactaaagctgcagtttctattcacttgagagacgcaattccaaatcaactgggagtgtttctagattccttaaacactgttaaaacttactttgcttccttcaaaggaaaattatcttcatcttcttcaagagaagacaacatacaaaatatagagaaccagccctgcaataacaacaacttcagtattacttcaccaagagttactaaatatgaatcacctttaagaagtaacctcaatacttcgtcaccctcgtggagcacacaaaaggccacgccatttaattactatgcaaagaagatgaatccgccttcttcttacagctctcagaataagaaaacacccctcgttgatcaaacttttgcaagagataatcttagtaatacatcaagtggcaacaaatctgcatcatcattttatggttcacgaaactctgcctggtctccaagtgataggaaatctaccaggggcccaggcctcatgcctccacctcgtccagggacctatacatcacgtttggcaagtcaaatttctttcagatctcgcgagaagctttcacttgaaaaagaagtggcattgactggtttttcaaacctggggaatacatgctacatgaatgctattcttcagtcactgtttggtgtaccaccctttgttcaggatctttcaaacaaggccttgttggaaaacgttcatcctcaatgtttgtataggtgtctttacagtgtgctcttgtgcaaaaagagatgtgaaaatcctgaggtgctaaaaaattgtttgaggaaactaaagcgaacaatctcagaagctgccactcgcttctcaggctatcatcagcatgatgctcatgagtttctgtgtcaggtgtttgatcaactaaaagatgatgttagtacttgtagctcgcctcctaaagatacctccaaagaaagcaacacagtgtcaacagattcaaagtgtcctgtgacaaggtcatttgaaagtggagtggtgcacacagtcagctgtaaacaatgtggtgagtcaacgccaaaagaagagatctaccatgcattttcccttgtgtgtgattcttcaaacatgtcttcatttggtgcaatcaatatgcaaaccttaatagagaaacactttgaggatgaagaactagaatactcatgtagtaaatgcgagtctaaggaggctgttctttcacacagtttcagcaggcttccaagagtgcttattcttcacttgaaacggtatggctacgacaacttaactgaagaacaagccaagaaacaagacaaggttaaaattgaaaggttcattgatctcagaatgctgtgctcatccaacaccaaggctccacttgccttccaaccaaagtcgccgctcaaaatgagcccgactaaatcaagccggaagccacagaaacggcattttatctgcgaagatgatgatgatgattctagtgattttcagccttctccttcagtgaggagaaaacttgctcattcattctctgacgtgaaagctacaagcactgctaaagtttctccacaaaacaaagaggcgaactctgaggatgaagtggaggtcataggcatttccaagcttaataaaacagtcgagtatagcaagctgtttaagacagaacaacctagcagcactactgacaaaactagtgataaaaactgcactcaatttgacattgatcagagtgtaaatcttgagaacacaactggaagatccagtttgggactggacaaacctgtttgggaaggtactgaagaggagcaaatggcatgggcaatggcagaaagtgccaagtcagcagaaaaagagtcaagagcaaaattgaatgagcaagaatcaactaaaattgacacagagtgcttaggaaagacaccagctgcgacagaggatactacaagtaattttgaagatgaagatttcaatctcataagtgatgtgtcagatgaagacttaatgagtgcagcccaggagagtggaccagaggaaacatgtggattgaaaggaggtgcaccaataacattaacaacacaaaactgttctgacaacctggatatcagtggtgtacacgacgctggtactaacaaaaactgcaatgctgattcaggtttagaaaagaactcgtgcaaggaaactgttctcaagaacagtcctatactgtgcgtaaaacgacgcaatgggcatctcgtgcgaaaacgaaaaactccagacaatgtcagtatgaccaaaacaccaacattaagaaagtttgatggtgatctttttgaagacagtgtaaaggagaacaaggtttctgaaagtggtgcaaagcttaatgacagccctaagagtagctggtttgacggtgatctttttgaagacagtgtaaaggagaacaaggtttctgcaagtggtgcaaagcctagcaacagccctaagaccagctggtacagtggttcatttggagacgatgacatggcaaaggcaatcaatatcagtctgcaagaacagaaaatgaagacagatgaagatgaagaactaaagaaggcattacagctaagcctacaagagttcgaagagaacggtgcagcaactgatcagcccaacataccagcaagggtggacactgagaatttaacagacgctgcttttcaggatgaggatggtgaaccctcaacacattcatacagactaattagtatcgtcagccatcttggtacaagctctacttcaggacactatatttctgatgtttatgattgcaaaactaaacagtggaccagttatgacgattctacagcaacaaagcttacagaacatggtgtccggtacaaaagacagcatagtggatacattttcttttatttgtacaaacaatgtgtagatgccatagagaatgcaagcccatgcaaggaaaacacacaaagatag

Transcript

evm.model.Ap11.1667_evm.model.Ap11.1672

ATGGCGGCCTGTGTACTCGATGGAGATAAACTTTGTGAGGTTGCTGGCAACGTCAAATGGTCCAGTGTGGATCGTTGTATGATGGACTATCATCATGGATCATTAGCTCTTTACAAGCTCAGTAGCAGTTATTACATTCATGCGATAACAGCTATAAAACGAGCTAAGCCTCTCAACAGTGTTCCTAACTTGGGATCCTGGTTCGACTCTAACATGTCCATGTCCATGCACATTGGCAAGACCTGTAGTAAAGCTTTTCATGGGTTGTACAACATACGACAAATCAGGAAATTTCTCAGCCCTGAGTCAACGAAGACTCTAGTCCACGCATTTGTAACTTCACACTTGGACTACTGCAACTCTCTTCTCTTTGGAGTTCCAAAGTACCAGACAGATTGTCTGCAGAAGTTTCCGTTAAAACCAGATAAATTTAACCTCCTCAGCCGCGAGTCACGGTTAACTTTGTCATTATCAGCCGATGCCACTAAAGCTGCAGTTTCTATTCACTTGAGAGACGCAATTCCAAATCAACTGGGAGTGTTTCTAGATTCCTTAAACACTGTTAAAACTTACTTTGCTTCCTTCAAAGGAAAATTATCTTCATCTTCTTCAAGAGAAGACAACATACAAAATATAGAGAACCAGCCCTGCAATAACAACAACTTCAGTATTACTTCACCAAGAGTTACTAAATATGAATCACCTTTAAGAAGTAACCTCAATACTTCGTCACCCTCGTGGAGCACACAAAAGGCCACGCCATTTAATTACTATGCAAAGAAGATGAATCCGCCTTCTTCTTACAGCTCTCAGAATAAGAAAACACCCCTCGTTGATCAAACTTTTGCAAGAGATAATCTTAGTAATACATCAAGTGGCAACAAATCTGCATCATCATTTTATGGTTCACGAAACTCTGCCTGGTCTCCAAGTGATAGGAAATCTACCAGGGGCCCAGGCCTCATGCCTCCACCTCGTCCAGGGACCTATACATCACGTTTGGCAAGTCAAATTTCTTTCAGATCTCGCGAGAAGCTTTCACTTGAAAAAGAAGTGGCATTGACTGGTTTTTCAAACCTGGGGAATACATGCTACATGAATGCTATTCTTCAGTCACTGTTTGGTGTACCACCCTTTGTTCAGGATCTTTCAAACAAGGCCTTGTTGGAAAACGTTCATCCTCAATGTTTGTATAGGTGTCTTTACAGTGTGCTCTTGTGCAAAAAGAGATGTGAAAATCCTGAGGTGCTAAAAAATTGTTTGAGGAAACTAAAGCGAACAATCTCAGAAGCTGCCACTCGCTTCTCAGGCTATCATCAGCATGATGCTCATGAGTTTCTGTGTCAGGTGTTTGATCAACTAAAAGATGATGTTAGTACTTGTAGCTCGCCTCCTAAAGATACCTCCAAAGAAAGCAACACAGTGTCAACAGATTCAAAGTGTCCTGTGACAAGGTCATTTGAAAGTGGAGTGGTGCACACAGTCAGCTGTAAACAATGTGGTGAGTCAACGCCAAAAGAAGAGATCTACCATGCATTTTCCCTTGTGTGTGATTCTTCAAACATGTCTTCATTTGGTGCAATCAATATGCAAACCTTAATAGAGAAACACTTTGAGGATGAAGAACTAGAATACTCATGTAGTAAATGCGAGTCTAAGGAGGCTGTTCTTTCACACAGTTTCAGCAGGCTTCCAAGAGTGCTTATTCTTCACTTGAAACGGTATGGCTACGACAACTTAACTGAAGAACAAGCCAAGAAACAAGACAAGGTTAAAATTGAAAGGTTCATTGATCTCAGAATGCTGTGCTCATCCAACACCAAGGCTCCACTTGCCTTCCAACCAAAGTCGCCGCTCAAAATGAGCCCGACTAAATCAAGCCGGAAGCCACAGAAACGGCATTTTATCTGCGAAGATGATGATGATGATTCTAGTGATTTTCAGCCTTCTCCTTCAGTGAGGAGAAAACTTGCTCATTCATTCTCTGACGTGAAAGCTACAAGCACTGCTAAAGTTTCTCCACAAAACAAAGAGGCGAACTCTGAGGATGAAGTGGAGGTCATAGGCATTTCCAAGCTTAATAAAACAGTCGAGTATAGCAAGCTGTTTAAGACAGAACAACCTAGCAGCACTACTGACAAAACTAGTGATAAAAACTGCACTCAATTTGACATTGATCAGAGTGTAAATCTTGAGAACACAACTGGAAGATCCAGTTTGGGACTGGACAAACCTGTTTGGGAAGGTACTGAAGAGGAGCAAATGGCATGGGCAATGGCAGAAAGTGCCAAGTCAGCAGAAAAAGAGTCAAGAGCAAAATTGAATGAGCAAGAATCAACTAAAATTGACACAGAGTGCTTAGGAAAGACACCAGCTGCGACAGAGGATACTACAAGTAATTTTGAAGATGAAGATTTCAATCTCATAAGTGATGTGTCAGATGAAGACTTAATGAGTGCAGCCCAGGAGAGTGGACCAGAGGAAACATGTGGATTGAAAGGAGGTGCACCAATAACATTAACAACACAAAACTGTTCTGACAACCTGGATATCAGTGGTGTACACGACGCTGGTACTAACAAAAACTGCAATGCTGATTCAGGTTTAGAAAAGAACTCGTGCAAGGAAACTGTTCTCAAGAACAGTCCTATACTGTGCGTAAAACGACGCAATGGGCATCTCGTGCGAAAACGAAAAACTCCAGACAATGTCAGTATGACCAAAACACCAACATTAAGAAAGTTTGATGGTGATCTTTTTGAAGACAGTGTAAAGGAGAACAAGGTTTCTGAAAGTGGTGCAAAGCTTAATGACAGCCCTAAGAGTAGCTGGTTTGACGGTGATCTTTTTGAAGACAGTGTAAAGGAGAACAAGGTTTCTGCAAGTGGTGCAAAGCCTAGCAACAGCCCTAAGACCAGCTGGTACAGTGGTTCATTTGGAGACGATGACATGGCAAAGGCAATCAATATCAGTCTGCAAGAACAGAAAATGAAGACAGATGAAGATGAAGAACTAAAGAAGGCATTACAGCTAAGCCTACAAGAGTTCGAAGAGAACGGTGCAGCAACTGATCAGCCCAACATACCAGCAAGGGTGGACACTGAGAATTTAACAGACGCTGCTTTTCAGGATGAGGATGGTGAACCCTCAACACATTCATACAGACTAATTAGTATCGTCAGCCATCTTGGTACAAGCTCTACTTCAGGACACTATATTTCTGATGTTTATGATTGCAAAACTAAACAGTGGACCAGTTATGACGATTCTACAGCAACAAAGCTTACAGAACATGGTGTCCGGTACAAAAGACAGCATAGTGGATACATTTTCTTTTATTTGTACAAACAATGTGTAGATGCCATAGAGAATGCAAGCCCATGCAAGGAAAACACACAAAGATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7F6T8	Ubiquitin carboxyl-terminal hydrolase 37 OS=Danio rerio OX=7955 GN=usp37 PE=2 SV=1
F1N5V1	Ubiquitin carboxyl-terminal hydrolase 37 OS=Bos taurus OX=9913 GN=USP37 PE=3 SV=1
E2RK09	Ubiquitin carboxyl-terminal hydrolase 37 OS=Canis lupus familiaris OX=9615 GN=USP37 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005244 (this species only)
Ubiquitin family	UBD\|Alpha-Helix\|UIM · all ubiquitin genes in this species
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF02809 all species →	UIM	Ubiquitin interaction motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR003903 all species →	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR050164 all species →	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24006 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0000082 all species →	Biological Process	G1/S transition of mitotic cell cycle	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11850	USP26_29_37; ubiquitin carboxyl-terminal hydrolase 26/29/37	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.