Detailed information of evm.model.Ap11.1802 in Astrangia poculata

Genomic Location: Ap11:19944914...19953842
NR annotation: CAH3134445.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O00602Ficolin-1 OS=Homo sapiens OX=9606 GN=FCN1 PE=1 SV=2
P57756Ficolin-2 OS=Rattus norvegicus OX=10116 GN=Fcn2 PE=2 SV=1
Q5I2E5Ficolin-2 OS=Bos taurus OX=9913 GN=FCN2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000013 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00812
all species →		EphrinEphrinDomainInterproscan
PF00147
all species →		Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014716
all species →		Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR001799
all species →		DomainEphrin receptor-binding domainInterproscan
IPR002181
all species →		DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR036056
all species →		Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR008972
all species →		Homologous_superfamilyCupredoxinInterproscan
IPR050373
all species →		FamilyFibrinogen C-terminal domain-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19143
all species →		FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan
GO:0062023
all species →		Cellular Componentcollagen-containing extracellular matrixInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K25356ANGPTL1, ANG3; angiopoietin-related protein 1-Signaling proteins-deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP