Gene detail

Detailed information of evm.model.Ap11.1837 in Astrangia poculata

Genomic Location: Ap11:20255003...20262128
NR annotation: XP_020632268.1, uncharacterized protein LOC110069139 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.1837

atggcaactggctcaagtacaagtaaaatattacgtatgccaacaacactcccaggacctcctgctgtacccatagttctgtctgctccctcagctgccgccggacctgtcagcagctttgaccttggagacaaccagaaaagatgggttgtgattggtgtgtgcttgaacaggcttctcttaccagtcctccgcgattttgctggaaaagaaatatccaaacactatacatcactgaagagctcaaacggaattgacacccaagtgtttggtccacacttgactcatgatggaacttttaagttgaattatggcagcatcaacaacaactggggcacgcataagagaaaggaacgtttgtatgattacaaagttaccacagatgttgacctggctaaactttaccttgaaccacacatggctaagtttacaggatttgataacacatgcgacatgtcagcagtgttagggatactaggaaatgcgtctgtttttcccgctcgtattcaaaacaatgccaaggatgtacgctctaaagtgagaaatgagtggggccattgcaacttcgaccactggacagaaccggagttcaactactgtttccagctcatggaaacattggttcgttcgctggggcttccaaaagctgatgaagataaagagcttgatgatcttcacgactgggaaactaagggcttgaaattgtgcatgggatgcccagtggataaggacttgatgaaacttgttagtgatgaggttattaacctgaaccagagcctggaagccatcaagaaatctagtgctgatgaagccaagaagataagtgaagcccttcaagatgtcacggatgaaataaataaattttataagcgtttaactgacattgagagtcgaatggaggctgagcgaaaagaacaattagaaaaaaacgaggctttgtcaggagcaattggggatatttctaacaatttaaccaaaatggaaaaacgacaagatacgaatgaagaaaacattgccttgctgggggaaaggcaaagtgatctagagacaactgtaacctctttaaaagatgaacagggtaatctaacctccaaggtagaggccttagaaatcgggcaaagtgaattagattctcggcttaaggctctagaagaaagcaatgttaatgcaacagccaatgttgaactttttcaagtaccaagtcgcaatcgttgcttttgtggtcgcgaaaccgagctagaaaaatttgcaacgcaactgaaaagcaccgagaacggttgcgctgagtcagcaatttgcggtctcgggggtgtgggaaaaacgtctctcgcggtggagtttctctggcgacaaaaggagaaggaggaatatccaggcggcattttttggatttcgggtgaaaacaacaatctctttcaaatatccctaagcgaaatggcgcgccaaattggcactctcgaaaaagagttctctaactccttgtcaagaactctcgactggttgagagggcgtgagaagatgtggtgtttggtcgttgacaatcttgacgagctggaaatgtctacggacatgcgcaagctgctcactggacattggaaacaagcggcgcgcggccatataatcataaccacaaggagagaagcgacggaaatcggagaagaaacaggaatcgaagaaaacttctgcatcgagttgaaatgtttgacagaggaagaaggaattcagtttttccgaatgcgaacgggaacagctggagatgaagagagtgacattcgtgaactagcgagggagcttggtggactgcctttagcccttgatcaagctgcggcctatatacgatgtgttcgtcagcccataaaagagtacatgaagaaatataagaagcaaaaactgcttcttctcaagaagaagaaggctcggcatctggtggaaaatacctcacttgagcgattggcaatccacactacatggttgctgaactttgatcacatcagtcaaatctcaaaagagatggagcttggagaaaccccaactcttgttatgaaagtgtccgcctttcttggtccggacgatattccttatgaagtaatcaatgaagggctaaacaaagacgacgaaactgaagcagtcagcgacttgtgggaccaggccgagatagtctctcttcttaccaagttttcccttttccaaagatatgggacgcattccttcagtgttcatcgtctggtgcaagaagtaatccgaagtgaggtggaaaaagaacaaaatgagctaagcgttctttcttgtgcagtacgtgtccttcaccgtgcattaacaagtacgcgctcacccgcagaagtgtgcgaaggtttcgttgaagatgctgttttcagtgttgagaatcctccttctttacagctatggggaaagttggcctcccatgcttcctatttacaggagcatttgcgcagcttctcggcaaaacataaagaatcggtccatactttgttacacacagaagaaactgtccgtatctttaatgaggcagcgatatttttcagtgtctctcaagataaaatcaaggcccaggcaatgcaagaactgaaactagagttcctagtatatcttgaaaattcatccgctttggaagattccagtttgccgccgtatttcgttgatgtgcccctgaaagacagggactacaagctgatatcttgttgtatgagacagcctcgtcctgaacacaagataatggctgaagcagattcctctcaaaatgaaagggaagaggaagccgagcagctcagagaaaaaggcaaccttgcagtaaaaaagaatgagtttaaagaggcattagatctttactccagtgccattgctttgtcgtctggggattatcgactgttctgtaacagggccctttgtcatttgaagctaggccagccacaaaatgctctagatgactgtcaaaagtgtctttctttgaaaccctattacagcaaagcactgcaacgaaaagcttgggctctccaagaacttgttaaaagtggatctcgtcaactaaaagggcaagctcgggcagcattggcagtggcggttcattttgactccagtcttcgctgtgacaaaaggttttgtgagatgtttccagaaatttcagcagtacaccctagagaaataagtaatgaaacacaactggcgtttgctttgatgacgacacaagaaaacgaaaccatgctattacacgaaggagagtataatttagcttcctttggtacctttacggacctccagattgtaggtctaggacccagaaccgttttgatttgtacacaagggtgtggagttgcccgcgccggatgttattttgagaatatcacttttcctaaagggaatgttgccctggtatgtgaaggcaaggaaggagcaattcacatgaaccactgtgaaatttcaggaggaatgacaagttgtgacgactacccagaatgcaacggaggtttagggtgtatagcagcctctttaggtaagcctgtgtgcgatcggactggaaagttcggagattcagaatcaaggtctggtattgctggtttccctggaatccagatttcgaatggaagctctgcaatgattgaaaactgtgttattcataactgtggaggcggtggcgccctagttgctggtgaaggttctcgattattagtcagaaaatgtgaagtgcacaggaaccatcaggctggtttggaagcaagagaaggtggggaattggttgcgtctgaaaacaggatatttgacagtggttatcacggtatcttgattggcccagatgcaggagaatgtgtcatcgatggcaataagatcttcgaaaatgcaagagaaggcatttttgccctgcacaataagaacaggatagtcatatgtaacaacgatattcatcacaacagaccctttggtctttcactggatgataattctcaaatgttaatcagtaacaacaagatatttgagaatggattctggggcatcctcgctaaatcgcgaacgtcagcacacatagcaggaaatgttctcactggcaataaatgtggcggcatttttctcggtgttaatttttctggaagagtttttctggaatcgaacacagttcgagaccacagtggtccttggctcgagtatcaatgtaagaatggcaccttagaaattgatagcagcgtatttaaggatgaagaccttgctgttcttggtgttccactgggagaaaaggagttttattcagttcctcccgttcttagcgaaaacaatgaacttaacaacgaagaaggcatgtatcatcccagaaaggttgttgaacgagtttatagcggctgcacgtattgccgtcgctcaagggatgaagtagagcgacttatgaagtgctctaattgccacatcgcttcttattgctgcaaggagtgtcaacaaaaacacagacccaaacacaagacgttatgtttagccctcaaaagtcgctattcggtaacagttgacactatccctttagttgaatcaggacgtattccgattcgaacatttggtactcatttaaaaggaattggagagggccctaaactcaatcgtaacagtcgtcagaagttcattgtcaagattcaaacacggactctaaatagccacccactgcagttgcttgtggtctacgacaaaagcctaacaatagatagcttcatccaaagtccagaaatcttcaatgtcataatggaatgtggtgtacttggagctttacataaattcacaagcaaaaaagttttttgctgggccatgtttgctgagggaggagagaagctgactgttttcctcgatcatttggcaccttatcaggagtggtag

Transcript

evm.model.Ap11.1837

ATGGCAACTGGCTCAAGTACAAGTAAAATATTACGTATGCCAACAACACTCCCAGGACCTCCTGCTGTACCCATAGTTCTGTCTGCTCCCTCAGCTGCCGCCGGACCTGTCAGCAGCTTTGACCTTGGAGACAACCAGAAAAGATGGGTTGTGATTGGTGTGTGCTTGAACAGGCTTCTCTTACCAGTCCTCCGCGATTTTGCTGGAAAAGAAATATCCAAACACTATACATCACTGAAGAGCTCAAACGGAATTGACACCCAAGTGTTTGGTCCACACTTGACTCATGATGGAACTTTTAAGTTGAATTATGGCAGCATCAACAACAACTGGGGCACGCATAAGAGAAAGGAACGTTTGTATGATTACAAAGTTACCACAGATGTTGACCTGGCTAAACTTTACCTTGAACCACACATGGCTAAGTTTACAGGATTTGATAACACATGCGACATGTCAGCAGTGTTAGGGATACTAGGAAATGCGTCTGTTTTTCCCGCTCGTATTCAAAACAATGCCAAGGATGTACGCTCTAAAGTGAGAAATGAGTGGGGCCATTGCAACTTCGACCACTGGACAGAACCGGAGTTCAACTACTGTTTCCAGCTCATGGAAACATTGGTTCGTTCGCTGGGGCTTCCAAAAGCTGATGAAGATAAAGAGCTTGATGATCTTCACGACTGGGAAACTAAGGGCTTGAAATTGTGCATGGGATGCCCAGTGGATAAGGACTTGATGAAACTTGTTAGTGATGAGGTTATTAACCTGAACCAGAGCCTGGAAGCCATCAAGAAATCTAGTGCTGATGAAGCCAAGAAGATAAGTGAAGCCCTTCAAGATGTCACGGATGAAATAAATAAATTTTATAAGCGTTTAACTGACATTGAGAGTCGAATGGAGGCTGAGCGAAAAGAACAATTAGAAAAAAACGAGGCTTTGTCAGGAGCAATTGGGGATATTTCTAACAATTTAACCAAAATGGAAAAACGACAAGATACGAATGAAGAAAACATTGCCTTGCTGGGGGAAAGGCAAAGTGATCTAGAGACAACTGTAACCTCTTTAAAAGATGAACAGGGTAATCTAACCTCCAAGGTAGAGGCCTTAGAAATCGGGCAAAGTGAATTAGATTCTCGGCTTAAGGCTCTAGAAGAAAGCAATGTTAATGCAACAGCCAATGTTGAACTTTTTCAAGTACCAAGTCGCAATCGTTGCTTTTGTGGTCGCGAAACCGAGCTAGAAAAATTTGCAACGCAACTGAAAAGCACCGAGAACGGTTGCGCTGAGTCAGCAATTTGCGGTCTCGGGGGTGTGGGAAAAACGTCTCTCGCGGTGGAGTTTCTCTGGCGACAAAAGGAGAAGGAGGAATATCCAGGCGGCATTTTTTGGATTTCGGGTGAAAACAACAATCTCTTTCAAATATCCCTAAGCGAAATGGCGCGCCAAATTGGCACTCTCGAAAAAGAGTTCTCTAACTCCTTGTCAAGAACTCTCGACTGGTTGAGAGGGCGTGAGAAGATGTGGTGTTTGGTCGTTGACAATCTTGACGAGCTGGAAATGTCTACGGACATGCGCAAGCTGCTCACTGGACATTGGAAACAAGCGGCGCGCGGCCATATAATCATAACCACAAGGAGAGAAGCGACGGAAATCGGAGAAGAAACAGGAATCGAAGAAAACTTCTGCATCGAGTTGAAATGTTTGACAGAGGAAGAAGGAATTCAGTTTTTCCGAATGCGAACGGGAACAGCTGGAGATGAAGAGAGTGACATTCGTGAACTAGCGAGGGAGCTTGGTGGACTGCCTTTAGCCCTTGATCAAGCTGCGGCCTATATACGATGTGTTCGTCAGCCCATAAAAGAGTACATGAAGAAATATAAGAAGCAAAAACTGCTTCTTCTCAAGAAGAAGAAGGCTCGGCATCTGGTGGAAAATACCTCACTTGAGCGATTGGCAATCCACACTACATGGTTGCTGAACTTTGATCACATCAGTCAAATCTCAAAAGAGATGGAGCTTGGAGAAACCCCAACTCTTGTTATGAAAGTGTCCGCCTTTCTTGGTCCGGACGATATTCCTTATGAAGTAATCAATGAAGGGCTAAACAAAGACGACGAAACTGAAGCAGTCAGCGACTTGTGGGACCAGGCCGAGATAGTCTCTCTTCTTACCAAGTTTTCCCTTTTCCAAAGATATGGGACGCATTCCTTCAGTGTTCATCGTCTGGTGCAAGAAGTAATCCGAAGTGAGGTGGAAAAAGAACAAAATGAGCTAAGCGTTCTTTCTTGTGCAGTACGTGTCCTTCACCGTGCATTAACAAGTACGCGCTCACCCGCAGAAGTGTGCGAAGGTTTCGTTGAAGATGCTGTTTTCAGTGTTGAGAATCCTCCTTCTTTACAGCTATGGGGAAAGTTGGCCTCCCATGCTTCCTATTTACAGGAGCATTTGCGCAGCTTCTCGGCAAAACATAAAGAATCGGTCCATACTTTGTTACACACAGAAGAAACTGTCCGTATCTTTAATGAGGCAGCGATATTTTTCAGTGTCTCTCAAGATAAAATCAAGGCCCAGGCAATGCAAGAACTGAAACTAGAGTTCCTAGTATATCTTGAAAATTCATCCGCTTTGGAAGATTCCAGTTTGCCGCCGTATTTCGTTGATGTGCCCCTGAAAGACAGGGACTACAAGCTGATATCTTGTTGTATGAGACAGCCTCGTCCTGAACACAAGATAATGGCTGAAGCAGATTCCTCTCAAAATGAAAGGGAAGAGGAAGCCGAGCAGCTCAGAGAAAAAGGCAACCTTGCAGTAAAAAAGAATGAGTTTAAAGAGGCATTAGATCTTTACTCCAGTGCCATTGCTTTGTCGTCTGGGGATTATCGACTGTTCTGTAACAGGGCCCTTTGTCATTTGAAGCTAGGCCAGCCACAAAATGCTCTAGATGACTGTCAAAAGTGTCTTTCTTTGAAACCCTATTACAGCAAAGCACTGCAACGAAAAGCTTGGGCTCTCCAAGAACTTGTTAAAAGTGGATCTCGTCAACTAAAAGGGCAAGCTCGGGCAGCATTGGCAGTGGCGGTTCATTTTGACTCCAGTCTTCGCTGTGACAAAAGGTTTTGTGAGATGTTTCCAGAAATTTCAGCAGTACACCCTAGAGAAATAAGTAATGAAACACAACTGGCGTTTGCTTTGATGACGACACAAGAAAACGAAACCATGCTATTACACGAAGGAGAGTATAATTTAGCTTCCTTTGGTACCTTTACGGACCTCCAGATTGTAGGTCTAGGACCCAGAACCGTTTTGATTTGTACACAAGGGTGTGGAGTTGCCCGCGCCGGATGTTATTTTGAGAATATCACTTTTCCTAAAGGGAATGTTGCCCTGGTATGTGAAGGCAAGGAAGGAGCAATTCACATGAACCACTGTGAAATTTCAGGAGGAATGACAAGTTGTGACGACTACCCAGAATGCAACGGAGGTTTAGGGTGTATAGCAGCCTCTTTAGGTAAGCCTGTGTGCGATCGGACTGGAAAGTTCGGAGATTCAGAATCAAGGTCTGGTATTGCTGGTTTCCCTGGAATCCAGATTTCGAATGGAAGCTCTGCAATGATTGAAAACTGTGTTATTCATAACTGTGGAGGCGGTGGCGCCCTAGTTGCTGGTGAAGGTTCTCGATTATTAGTCAGAAAATGTGAAGTGCACAGGAACCATCAGGCTGGTTTGGAAGCAAGAGAAGGTGGGGAATTGGTTGCGTCTGAAAACAGGATATTTGACAGTGGTTATCACGGTATCTTGATTGGCCCAGATGCAGGAGAATGTGTCATCGATGGCAATAAGATCTTCGAAAATGCAAGAGAAGGCATTTTTGCCCTGCACAATAAGAACAGGATAGTCATATGTAACAACGATATTCATCACAACAGACCCTTTGGTCTTTCACTGGATGATAATTCTCAAATGTTAATCAGTAACAACAAGATATTTGAGAATGGATTCTGGGGCATCCTCGCTAAATCGCGAACGTCAGCACACATAGCAGGAAATGTTCTCACTGGCAATAAATGTGGCGGCATTTTTCTCGGTGTTAATTTTTCTGGAAGAGTTTTTCTGGAATCGAACACAGTTCGAGACCACAGTGGTCCTTGGCTCGAGTATCAATGTAAGAATGGCACCTTAGAAATTGATAGCAGCGTATTTAAGGATGAAGACCTTGCTGTTCTTGGTGTTCCACTGGGAGAAAAGGAGTTTTATTCAGTTCCTCCCGTTCTTAGCGAAAACAATGAACTTAACAACGAAGAAGGCATGTATCATCCCAGAAAGGTTGTTGAACGAGTTTATAGCGGCTGCACGTATTGCCGTCGCTCAAGGGATGAAGTAGAGCGACTTATGAAGTGCTCTAATTGCCACATCGCTTCTTATTGCTGCAAGGAGTGTCAACAAAAACACAGACCCAAACACAAGACGTTATGTTTAGCCCTCAAAAGTCGCTATTCGGTAACAGTTGACACTATCCCTTTAGTTGAATCAGGACGTATTCCGATTCGAACATTTGGTACTCATTTAAAAGGAATTGGAGAGGGCCCTAAACTCAATCGTAACAGTCGTCAGAAGTTCATTGTCAAGATTCAAACACGGACTCTAAATAGCCACCCACTGCAGTTGCTTGTGGTCTACGACAAAAGCCTAACAATAGATAGCTTCATCCAAAGTCCAGAAATCTTCAATGTCATAATGGAATGTGGTGTACTTGGAGCTTTACATAAATTCACAAGCAAAAAAGTTTTTTGCTGGGCCATGTTTGCTGAGGGAGGAGAGAAGCTGACTGTTTTCCTCGATCATTTGGCACCTTATCAGGAGTGGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A2J6RX17	Nucleotide-binding leucine-rich repeat (NLR)-like protein OS=Hyaloscypha variabilis (strain UAMH 11265 / GT02V1 / F) OX=1149755 GN=L207DRAFT_509616 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000290 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00931 all species →	NB-ARC	NB-ARC domain	Domain	Interproscan
PF01753 all species →	zf-MYND	MYND finger	Domain	Interproscan
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF13229 all species →	Beta_helix	Right handed beta helix region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR002182 all species →	Domain	NB-ARC	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR012334 all species →	Homologous_superfamily	Pectin lyase fold	Interproscan
IPR047150 all species →	Family	SGT	Interproscan
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR006626 all species →	Repeat	Parallel beta-helix repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR011050 all species →	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan
IPR039448 all species →	Domain	Right handed beta helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45831 all species →	LD24721P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0043531 all species →	Molecular Function	ADP binding	Interproscan
GO:0006620 all species →	Biological Process	post-translational protein targeting to endoplasmic reticulum membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan
GO:0072380 all species →	Cellular Component	TRC complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap11.1837.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.