Detailed information of evm.model.Ap11.1893 in Astrangia poculata

Genomic Location: Ap11:20940789...20944469
NR annotation: XP_020632281.1, neurogenic locus notch homolog protein 1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P35440Thrombospondin-2 OS=Gallus gallus OX=9031 GN=THBS2 PE=2 SV=1
P35443Thrombospondin-4 OS=Homo sapiens OX=9606 GN=THBS4 PE=1 SV=2
P82279Protein crumbs homolog 1 OS=Homo sapiens OX=9606 GN=CRB1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000270 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07974
all species →		EGF_2EGF-like domainDomainInterproscan
PF12661
all species →		hEGFHuman growth factor-like EGFDomainInterproscan
PF07645
all species →		EGF_CACalcium-binding EGF domainDomainInterproscan
PF00008
all species →		EGFEGF-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR009030
all species →		Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR051830
all species →		FamilyNeurogenic locus notch homologInterproscan
IPR013111
all species →		DomainEGF-like domain, extracellularInterproscan
IPR018097
all species →		Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR001881
all species →		DomainEGF-like calcium-binding domainInterproscan
IPR013032
all species →		Conserved_siteEGF-like, conserved siteInterproscan
IPR049883
all species →		DomainNOTCH1 EGF-like calcium-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24033
all species →		EGF-LIKE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap11.1893.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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