Genomic Location: Ap11:21062775...21067003
NR annotation: XP_020632275.1, uncharacterized protein LOC110069145 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap11.1903 |
| Transcript |
| evm.model.Ap11.1903 |
| Protein |
| evm.model.Ap11.1903 |
| UniProt accession | Description |
|---|---|
| P77952 | L-glutamine:scyllo-inosose aminotransferase OS=Streptomyces griseus OX=1911 GN=stsC PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006987 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01041 all species → | DegT_DnrJ_EryC1 | DegT/DnrJ/EryC1/StrS aminotransferase family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015421 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, major domain | Interproscan |
| IPR015422 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, small domain | Interproscan |
| IPR000653 all species → | Family | DegT/DnrJ/EryC1/StrS aminotransferase | Interproscan |
| IPR015424 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30244 all species → | TRANSAMINASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000271 all species → | Biological Process | polysaccharide biosynthetic process | Interproscan |
| GO:0008483 all species → | Molecular Function | transaminase activity | Interproscan |
| GO:0030170 all species → | Molecular Function | pyridoxal phosphate binding | Interproscan |
evm.model.Ap11.1903.Transcript abundance of evm.model.Ap11.1903 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
