Gene detail

Detailed information of evm.model.Ap11.221 in Astrangia poculata

Genomic Location: Ap11:2756239...2782529
NR annotation: XP_022797569.1, villin-1-like [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.221

atgccagttgcagaaagtggacaaaaagcatttcctggtgcaggaactaaaccaggagttgagatctggagaattgagtttttcaaacctgttaaagttgaccccaagacgcatggaaaattttacaagggtgattcttacattatacttgagacaattgttgctggaaaaagggcgaacttatatttttggctggggccagaaacctctacggatgaacaaggagctgctgctcagctgtctgtagcacttgatgatgaactgggtggttaccctgtgcagcatcgtgtggttggaggtcacgaagatgctcaattcatgaacctattcaaaaagggcttgcgattgctagatggtggccatgcatcaggtttccgagaagggaagaaaaagtttgaaaaggcattgattcgagtgaaaggaaaacgcaaagtttatgccgcacaggtgccactcagtgttgattcccttaacaatggagattgttttgttcttgactctggaagatcaatttttgtgtggctcggaaaggatagcaatggcaaggagaggtttaatgctataaagtatgcacgggagttacgagatgaggagagggctggtctagcttccgtgattcttgtcgataccccagaggagcaggaagaattcttttaccaattgactggaaacagacgaattgtgcccattactaaagaaggagaaagcgacgagtcacatgataaaaccattagtcccaatttatacagggtcaacgaggattccagtggaaatatcacaatgaaagaaacaggaaccacacctttgaagcgagaagatttagactcggacgatgcttttatacttgagacaggagaaagtgtttatgtatggctaggaaggaaggctactcggggtgaaaaatctcaagctttcaaagatgcccaagggtttctatctgccagacaactgaatcctaacacatccattaaaatcattaaagaagaacttgagccatcagagtttaaacaatattttggtgtttgggactccacaaccggacgtacataccaagctggtagaggcattgccactagagaacaactagatcagagaccaaagtttgaagtgaaatccatgcacgagagaagagcttcgatgaccagcactcttcctgatgatgggacgggcactgtgcaagtttaccgagtaaaaggctttgagctagaacaagttccagctaaatcccaaggagtgttctattctggtgactgctacgtcattctgtacacttatctcaagaacaatcgggaacgtcatatcatttacttttggctgggaaatgatagtacagcagatgaacaaggagcagccgcagctggcgctattgccttagatgacaagtttagtggagaaccctaccaggttcgagtttgtgaaggaaaggagcctgaacatttatttatgattttcaatcgccggctgctcatctatcagggtggacatgctagtggtttcaggaacttgaaaagtgaaggaactgcctcagaaacccgtcttcttcaggttcgcgtcactggacaaaattcaaggattgttgaggtggtgcccgtagcccaatccctgaacagcagtgatgtgttcgtgttacacagtcctaccctttgctttatctgggttggaaaaggcagcattggtgacgagagagaggttgctagagaggtggtacggcttatttggaaatcagatgatgctgatcttttgatggaaggaaaggaaccaattagcttctggaatatgttgggtgggcaagctgactatggatcggcaaagcagatctgggcagatgaagaattttccgaacatgccgccaggctgtttcactgctctaacgcgtcaggcaggttcaaagtggaggaggttcttgactttacccaagaggatctcgaggaagatgacgtcatgatccttgatgcttggacgcagctgtttgtgtgggttggagcgactgcacgcacagaggagaagcaggaagccgtaaagactgctttggattacgtgaagacagatccgcgccagcgatctcctaacatgaccatgtcggtgatcaaacagggagcagagcccgtggcgttcaaatcttactttgtggcctgggaaccacaaatgtggaacaagaagatgagctatgaagatcagttgaatgctattaaacaagacaatgctaaagtgaatccggacgcatggaacatgactgagtgggaagagaagctcaagccaaagagttttcctctggaggtcttacaaaggaaaggagaggacttacccgaggatgtggaccctactaagaaagagttgcatcttgaggacgacgaatttcaacgtcttttccaaatgtccaagaaagaatgggagggtgttccacaatggaagaaaaacgaggccaagaaaaaactggatttgttctaa

Transcript

evm.model.Ap11.221

ATGCCAGTTGCAGAAAGTGGACAAAAAGCATTTCCTGGTGCAGGAACTAAACCAGGAGTTGAGATCTGGAGAATTGAGTTTTTCAAACCTGTTAAAGTTGACCCCAAGACGCATGGAAAATTTTACAAGGGTGATTCTTACATTATACTTGAGACAATTGTTGCTGGAAAAAGGGCGAACTTATATTTTTGGCTGGGGCCAGAAACCTCTACGGATGAACAAGGAGCTGCTGCTCAGCTGTCTGTAGCACTTGATGATGAACTGGGTGGTTACCCTGTGCAGCATCGTGTGGTTGGAGGTCACGAAGATGCTCAATTCATGAACCTATTCAAAAAGGGCTTGCGATTGCTAGATGGTGGCCATGCATCAGGTTTCCGAGAAGGGAAGAAAAAGTTTGAAAAGGCATTGATTCGAGTGAAAGGAAAACGCAAAGTTTATGCCGCACAGGTGCCACTCAGTGTTGATTCCCTTAACAATGGAGATTGTTTTGTTCTTGACTCTGGAAGATCAATTTTTGTGTGGCTCGGAAAGGATAGCAATGGCAAGGAGAGGTTTAATGCTATAAAGTATGCACGGGAGTTACGAGATGAGGAGAGGGCTGGTCTAGCTTCCGTGATTCTTGTCGATACCCCAGAGGAGCAGGAAGAATTCTTTTACCAATTGACTGGAAACAGACGAATTGTGCCCATTACTAAAGAAGGAGAAAGCGACGAGTCACATGATAAAACCATTAGTCCCAATTTATACAGGGTCAACGAGGATTCCAGTGGAAATATCACAATGAAAGAAACAGGAACCACACCTTTGAAGCGAGAAGATTTAGACTCGGACGATGCTTTTATACTTGAGACAGGAGAAAGTGTTTATGTATGGCTAGGAAGGAAGGCTACTCGGGGTGAAAAATCTCAAGCTTTCAAAGATGCCCAAGGGTTTCTATCTGCCAGACAACTGAATCCTAACACATCCATTAAAATCATTAAAGAAGAACTTGAGCCATCAGAGTTTAAACAATATTTTGGTGTTTGGGACTCCACAACCGGACGTACATACCAAGCTGGTAGAGGCATTGCCACTAGAGAACAACTAGATCAGAGACCAAAGTTTGAAGTGAAATCCATGCACGAGAGAAGAGCTTCGATGACCAGCACTCTTCCTGATGATGGGACGGGCACTGTGCAAGTTTACCGAGTAAAAGGCTTTGAGCTAGAACAAGTTCCAGCTAAATCCCAAGGAGTGTTCTATTCTGGTGACTGCTACGTCATTCTGTACACTTATCTCAAGAACAATCGGGAACGTCATATCATTTACTTTTGGCTGGGAAATGATAGTACAGCAGATGAACAAGGAGCAGCCGCAGCTGGCGCTATTGCCTTAGATGACAAGTTTAGTGGAGAACCCTACCAGGTTCGAGTTTGTGAAGGAAAGGAGCCTGAACATTTATTTATGATTTTCAATCGCCGGCTGCTCATCTATCAGGGTGGACATGCTAGTGGTTTCAGGAACTTGAAAAGTGAAGGAACTGCCTCAGAAACCCGTCTTCTTCAGGTTCGCGTCACTGGACAAAATTCAAGGATTGTTGAGGTGGTGCCCGTAGCCCAATCCCTGAACAGCAGTGATGTGTTCGTGTTACACAGTCCTACCCTTTGCTTTATCTGGGTTGGAAAAGGCAGCATTGGTGACGAGAGAGAGGTTGCTAGAGAGGTGGTACGGCTTATTTGGAAATCAGATGATGCTGATCTTTTGATGGAAGGAAAGGAACCAATTAGCTTCTGGAATATGTTGGGTGGGCAAGCTGACTATGGATCGGCAAAGCAGATCTGGGCAGATGAAGAATTTTCCGAACATGCCGCCAGGCTGTTTCACTGCTCTAACGCGTCAGGCAGGTTCAAAGTGGAGGAGGTTCTTGACTTTACCCAAGAGGATCTCGAGGAAGATGACGTCATGATCCTTGATGCTTGGACGCAGCTGTTTGTGTGGGTTGGAGCGACTGCACGCACAGAGGAGAAGCAGGAAGCCGTAAAGACTGCTTTGGATTACGTGAAGACAGATCCGCGCCAGCGATCTCCTAACATGACCATGTCGGTGATCAAACAGGGAGCAGAGCCCGTGGCGTTCAAATCTTACTTTGTGGCCTGGGAACCACAAATGTGGAACAAGAAGATGAGCTATGAAGATCAGTTGAATGCTATTAAACAAGACAATGCTAAAGTGAATCCGGACGCATGGAACATGACTGAGTGGGAAGAGAAGCTCAAGCCAAAGAGTTTTCCTCTGGAGGTCTTACAAAGGAAAGGAGAGGACTTACCCGAGGATGTGGACCCTACTAAGAAAGAGTTGCATCTTGAGGACGACGAATTTCAACGTCTTTTCCAAATGTCCAAGAAAGAATGGGAGGGTGTTCCACAATGGAAGAAAAACGAGGCCAAGAAAAAACTGGATTTGTTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P02640	Villin-1 OS=Gallus gallus OX=9031 GN=VIL1 PE=1 SV=2
Q9WU06	Advillin OS=Rattus norvegicus OX=10116 GN=Avil PE=2 SV=2
P09327	Villin-1 OS=Homo sapiens OX=9606 GN=VIL1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001445 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00626 all species →	Gelsolin	Gelsolin repeat	Domain	Interproscan
PF02209 all species →	VHP	Villin headpiece domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029006 all species →	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan
IPR007123 all species →	Domain	Gelsolin-like domain	Interproscan
IPR003128 all species →	Domain	Villin headpiece	Interproscan
IPR036886 all species →	Homologous_superfamily	Villin headpiece domain superfamily	Interproscan
IPR007122 all species →	Family	Villin/Gelsolin	Interproscan
IPR036180 all species →	Homologous_superfamily	Gelsolin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11977 all species →	VILLIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008154 all species →	Biological Process	actin polymerization or depolymerization	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0051014 all species →	Biological Process	actin filament severing	Interproscan
GO:0051016 all species →	Biological Process	barbed-end actin filament capping	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap11.221.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.