Gene detail

Detailed information of evm.model.Ap11.235 in Astrangia poculata

Genomic Location: Ap11:2944281...2965417
NR annotation: XP_020630368.1, hypoxia-inducible factor 1-alpha-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.235

atgtccaaaaagaagattcaattttatggttcagctgactttttccagagtcttcaattctggcggttggcaggagcatgtgaaattccctacatagacattttccctgatggacactgctgttccatgaatcgtccacgatttttacagctgggaacggatactagacgagattttgcaccgttggttttcaatcctgtaggacctttcagtcaaggaagtattttgcacaatcctcaagagagctttgagactgtgccgagactttctaagcaggacaaaacaacaacgactacgtctgctacaaaccatcaatcgaagggaagaccattgtcagcaaaaactatggcatccaaatcactcaaaaacagcgagtttcagaagaagagaaggtcacgagatgcagcacgatcaagaaggggacaacaaaatgacgagtttgtggaactagccaatcagcttccactgccagttggccttgcatcgcagcttgacagactctgcatcatgcgacttgtcaacagctacatcaaaatgaaaaacctccttcattcccttgtctcgcaagatttgaagaaaattacaactctcaatgtgtcagaaagaacagtttatgacaaggcatcactggaggcactagatggctttgtctttgtggtgactccagatggtcagtgcatttatgtgtccgataacatcaaccattacatgggactctcacagatcgaagtaactggtaacagtttctacaaatacattcacccctgtgatcacgaggagttatccaatcagcttggaggacagattccgctagaagacatggaaatctttgatgggcttttctgctcagattctgtgttcatgatgagcaaccatctcaagggaggatcaaagaatgttgctcacgagaatccacacaagtcattcttcttgcgcatgaaaagcactttgacgagcagggggaagaatgtcaacctccgagcatcaacctacagggtggtccactgcactggctgcatgaaaatgcagactagagtattagagtcaggagaagaagagcaagtcccaatgtttttggtcggcattggagtgccactgatgtttggctccacatttgaagttccactcgatagaggaacgttcaccagtcgccacagccttgacatgaatttcctgtcatgtgatgaaagtgttaaagacctgcttggtttcacgccagcagagattgtcgggaagtcttggtaccactttcagcatgcttgtgacctgaacacggcattagcctgccataaaacattgctaaccaagggacagtcagtaagcaagtactaccggttcttggtgcgcaatggaggctgggtgtggctactgaccaaggccaacatagtttacgacagcaagacttgtcagccacagtttgtcttgtgcacaaattacatcatcatgagagcagaccagaaggactacattctgtcctcagagcagttgaacccagtaccagcgcccttgggactagacctggtggtgaaaaaagaaaacgtcaaaggaagaggaacacgaagaaagcattccattgtgttagaagaacgcaccaagctgctcaaggctgcagcacatgagcagcgcccaggtggagatattgtgcctaagaaggaggtcaatcttgacacatgctgcaagatggcttcaactaaacagattgctaagaagtcctgtcagtgtttggaggatgttgactgcgaccacatgaatttccaggattgcctgccagtagcatgggacaccaatgaagaggttattgcacaacaacaaaagtacgaaaagatgctacacagtcactatggtgtcatggaaaccccccagccctcgtccccagaaaacagcactactgaaaatagaataccgtactgcccttcaccatgtgacgaccaaaacattagtggtgacaaagaaaaggaggcaaacgacgacgaagagaactttgatgaacgtgcgccattcattcccttgtcaatagtcgactccgggttggattgtgatgacgacttactagttgagattccattcattgattcaccaatgacaccatcatcatggctgcttaatgctgacgagagcatgccgtctccgggtagcgtttccatgaccacaccaactccaaacagagctaccacttcatacagaagtttttccaactcctcttcacctgtcatgtcccggaaaggcgtgccgacagctgtgaaacgaagtgcttacgtcactaacgaggtagcatccaaaggaaaggggatctttccaaacatcactacatgggatgccgaggtcaacgcacctgttcagaacacactcctacagggagaggagctactgagagcgcttgaatgcgcagactttttgtga

Transcript

evm.model.Ap11.235

ATGTCCAAAAAGAAGATTCAATTTTATGGTTCAGCTGACTTTTTCCAGAGTCTTCAATTCTGGCGGTTGGCAGGAGCATGTGAAATTCCCTACATAGACATTTTCCCTGATGGACACTGCTGTTCCATGAATCGTCCACGATTTTTACAGCTGGGAACGGATACTAGACGAGATTTTGCACCGTTGGTTTTCAATCCTGTAGGACCTTTCAGTCAAGGAAGTATTTTGCACAATCCTCAAGAGAGCTTTGAGACTGTGCCGAGACTTTCTAAGCAGGACAAAACAACAACGACTACGTCTGCTACAAACCATCAATCGAAGGGAAGACCATTGTCAGCAAAAACTATGGCATCCAAATCACTCAAAAACAGCGAGTTTCAGAAGAAGAGAAGGTCACGAGATGCAGCACGATCAAGAAGGGGACAACAAAATGACGAGTTTGTGGAACTAGCCAATCAGCTTCCACTGCCAGTTGGCCTTGCATCGCAGCTTGACAGACTCTGCATCATGCGACTTGTCAACAGCTACATCAAAATGAAAAACCTCCTTCATTCCCTTGTCTCGCAAGATTTGAAGAAAATTACAACTCTCAATGTGTCAGAAAGAACAGTTTATGACAAGGCATCACTGGAGGCACTAGATGGCTTTGTCTTTGTGGTGACTCCAGATGGTCAGTGCATTTATGTGTCCGATAACATCAACCATTACATGGGACTCTCACAGATCGAAGTAACTGGTAACAGTTTCTACAAATACATTCACCCCTGTGATCACGAGGAGTTATCCAATCAGCTTGGAGGACAGATTCCGCTAGAAGACATGGAAATCTTTGATGGGCTTTTCTGCTCAGATTCTGTGTTCATGATGAGCAACCATCTCAAGGGAGGATCAAAGAATGTTGCTCACGAGAATCCACACAAGTCATTCTTCTTGCGCATGAAAAGCACTTTGACGAGCAGGGGGAAGAATGTCAACCTCCGAGCATCAACCTACAGGGTGGTCCACTGCACTGGCTGCATGAAAATGCAGACTAGAGTATTAGAGTCAGGAGAAGAAGAGCAAGTCCCAATGTTTTTGGTCGGCATTGGAGTGCCACTGATGTTTGGCTCCACATTTGAAGTTCCACTCGATAGAGGAACGTTCACCAGTCGCCACAGCCTTGACATGAATTTCCTGTCATGTGATGAAAGTGTTAAAGACCTGCTTGGTTTCACGCCAGCAGAGATTGTCGGGAAGTCTTGGTACCACTTTCAGCATGCTTGTGACCTGAACACGGCATTAGCCTGCCATAAAACATTGCTAACCAAGGGACAGTCAGTAAGCAAGTACTACCGGTTCTTGGTGCGCAATGGAGGCTGGGTGTGGCTACTGACCAAGGCCAACATAGTTTACGACAGCAAGACTTGTCAGCCACAGTTTGTCTTGTGCACAAATTACATCATCATGAGAGCAGACCAGAAGGACTACATTCTGTCCTCAGAGCAGTTGAACCCAGTACCAGCGCCCTTGGGACTAGACCTGGTGGTGAAAAAAGAAAACGTCAAAGGAAGAGGAACACGAAGAAAGCATTCCATTGTGTTAGAAGAACGCACCAAGCTGCTCAAGGCTGCAGCACATGAGCAGCGCCCAGGTGGAGATATTGTGCCTAAGAAGGAGGTCAATCTTGACACATGCTGCAAGATGGCTTCAACTAAACAGATTGCTAAGAAGTCCTGTCAGTGTTTGGAGGATGTTGACTGCGACCACATGAATTTCCAGGATTGCCTGCCAGTAGCATGGGACACCAATGAAGAGGTTATTGCACAACAACAAAAGTACGAAAAGATGCTACACAGTCACTATGGTGTCATGGAAACCCCCCAGCCCTCGTCCCCAGAAAACAGCACTACTGAAAATAGAATACCGTACTGCCCTTCACCATGTGACGACCAAAACATTAGTGGTGACAAAGAAAAGGAGGCAAACGACGACGAAGAGAACTTTGATGAACGTGCGCCATTCATTCCCTTGTCAATAGTCGACTCCGGGTTGGATTGTGATGACGACTTACTAGTTGAGATTCCATTCATTGATTCACCAATGACACCATCATCATGGCTGCTTAATGCTGACGAGAGCATGCCGTCTCCGGGTAGCGTTTCCATGACCACACCAACTCCAAACAGAGCTACCACTTCATACAGAAGTTTTTCCAACTCCTCTTCACCTGTCATGTCCCGGAAAGGCGTGCCGACAGCTGTGAAACGAAGTGCTTACGTCACTAACGAGGTAGCATCCAAAGGAAAGGGGATCTTTCCAAACATCACTACATGGGATGCCGAGGTCAACGCACCTGTTCAGAACACACTCCTACAGGGAGAGGAGCTACTGAGAGCGCTTGAATGCGCAGACTTTTTGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q309Z6	Hypoxia-inducible factor 1-alpha OS=Eospalax fontanierii baileyi OX=146132 GN=HIF1A PE=2 SV=1
Q0PGG7	Hypoxia-inducible factor 1-alpha OS=Bos mutus grunniens OX=30521 GN=HIF1A PE=2 SV=1
Q9XTA5	Hypoxia-inducible factor 1-alpha OS=Bos taurus OX=9913 GN=HIF1A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004064 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14598 all species →	PAS_11	PAS domain	Domain	Interproscan
PF08778 all species →	HIF-1a_CTAD	HIF-1 alpha C terminal transactivation domain	Domain	Interproscan
PF00989 all species →	PAS	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR014887 all species →	Domain	HIF-1 alpha, C-terminal transactivation domain	Interproscan
IPR001610 all species →	Repeat	PAC motif	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR013767 all species →	Domain	PAS fold	Interproscan
IPR001067 all species →	Family	Nuclear translocator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23043 all species →	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08268	HIF1A; hypoxia-inducible factor 1 alpha	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.