Gene detail

Detailed information of evm.model.Ap11.242 in Astrangia poculata

Genomic Location: Ap11:3088940...3112886
NR annotation: XP_020600649.1, uncharacterized protein LOC110039840 isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.242

atgacggcgaacagtttgtttaaaagttctttcaccaaaagtgacaatagtaacataatctattctttacagagtgaagttgttgaacttcgcaaggagagatctcgagatgcagcaagaagcagacgtggcaaggagaacgctcagtttgatgaactggccaaacttctgccgttaccaggtgccattacgtcacagctggataaggcttccattgtccggcttacaatcagttacctgaatatgaaacagtttggtcgaagaagagttaaacgttatcgtcaggcatcaacctgctcggttctgtcagagtcgtcaatgtcacccctgtctgatgttgatgtggatggaagtctagcaagtccttccccgccatcctccatttcttcaccgccacctactgccagtacatcggcagctgctaccattgttccatttaatcagggtactgccagttatagcgacctcgcagctaacagtggtatctttttactacaggcactggatggtttcctgtttgttctatccagcgatgcaaaagtcctttacgtttcagagactgtgtctgtgcatcttggattgtcacaggttgaactgacaggaagcagtatgttctgttatattcacccagaggatcaacaggatctcatcaatgtgttggaggctgcgaaggaagaattagaaaataacagtactcagtctgccgcccccgggaggtacacagatgatattcccttctttgggaatcagcaagaaagttttttaaatgaggacggccgtcctaataaagagaaaccaaaatcattcttcttacgaatgaagtgcactctagtaagacgaggaggatcctataccaaatcctctgggttcaaggttattcactgtatgggaagaatgaagagatactctactgggggtattcctggtccaaagtatgcatttgtggccatcgcacagccactgccgacaatgaacatcaacgagcttccactggagtgcaacatgtttgtgagccgagtaaacatggacctaaagattgtttattgtgaaggaagaattcacaagtttatggattactttgctagagatattgttggcatgtctgcttacgatttttaccatggcaatgatgttgctgtgattcaaggccaccatgcaaaatttcttacaaagggccaagtccttacaaagtactatcgctggatgaacaaaaatggtggttgggtctggatgcaaaccaaggcatcacttattccacatcctacaaatccggagctgaaacaaatgttatgtctgaattaccttgtcagtgaagtggaacaccgaggtgttgtgcttggaatggctcagttagaagacaaaccagctctacatcctaaagcttacatcacagaggtggaaaatgagtctgatgtcactggcgatctcaaagacgctcagtatgatgaccaagtgatggtttatccaaagtggcacgagacctccgacaaccttgtccctaaaccaacacttctggattcattggcccttacacgatccggttacccaacaaccactggggctgacgcaaccggacttgaaaacgatgtattcaccacttcagctgaaccttggggtcaagctagtaccagtacctggagttcggctggcaggctcaatgaactttccaggtctgatggtctccttggcaatggaagctcctcaagtaccatagatgacgattttgatgactgggcaaagatgatcaatgcggaattgaacgagttagatcgagacattgttaagtatgtggcaaccggtggtgatgagattgttcagttgcctgacactagcctagaagttcttctgaacactgacaacctcgatttgcaaacaaatgccgccatccaaaatctggttgcacccaaaattgaagaaattcccatggacagtgactccaattctacagtttcttctctaactcctgtaaatgcacaaagtatgcctactcctagaatgccctctacagcttttgtctcaaacatgcctatggatacctttgccggtgacaccaaaccaagtttgatgcccatgaatcaaggtgacttgcaagagagaagtcttgggtttactggttcaaagcttcgcgggatgaacagcccttgcatgtttagcaatgcaaactcgactggtgagagaaattaccagcagaaagcaccagctctgagtcatttgaattcttcaccttcttcaaatgcacctgtgcagctcctgcaaatgcaaccaactcaaaccattcagcctgctcgagatccaaatgctatgaagacgacgcaaagtagaaatgctggaaggatgccgcaaatgcctagaagtgatatgacatcaacaggcggtggaaacttcagagttccagctcctgttccgcaaatgccaaggcaaaatgatttgcaacagcaactctttcaagagctcaggggattgattcccgaagacatgtgctacaccgaccaaatggtggttgacttggtcgatgatatgatgttagatgcagataagagaaaagacgaggacaaacaacttgcatcacttctgcagcaaggaggctttgttcaaatagaagaaatacccgaaatcgaaatcaaacaagaagtggtgacaccgacattaccgcagccaacaagctcatttcctagcttctctgacagcttggcaaaccagagtagtcaacctcaagtgctaagtagctctacatcttcctttacttcaacagatcccttcaaccaactttccggcaaccattctacatatggggctgcacctactagaaggccgcaaaacggaactgttcacaatcaaagccctcctgtaaggttccaaaatggcaattctcagtttgttaatcaaggggacaataacatgaactttttaaactctttgtcaaatgcaggagttaccagtacacaaactggtgcacccatgccaagcaacaatctgtggaactctaacccacccataaagcaaaacgttatgcaacaaggattaagaaacttgctgcaaagcacaggcagcccaccaccgaagcaaaccacaaactttcaaaatactcaagtgaactctggcatgatggcgcagcagccaaacatgcccttcttgccacagcaaaatgtcgcaaacatggtgccacagaatggttcccttaatactcaaagtaatttgtttaacatgacggtagttcccaatgtagaccagatgaatctccaggaacttaaccaaatgaatgctctcctccaatcagtacctaccttgccaacttcaagctatcagaacatcaatggcacgaacatgaacatcggaaatcagcattaccaaaagtttgacatgaacagaaaactatga

Transcript

evm.model.Ap11.242

ATGACGGCGAACAGTTTGTTTAAAAGTTCTTTCACCAAAAGTGACAATAGTAACATAATCTATTCTTTACAGAGTGAAGTTGTTGAACTTCGCAAGGAGAGATCTCGAGATGCAGCAAGAAGCAGACGTGGCAAGGAGAACGCTCAGTTTGATGAACTGGCCAAACTTCTGCCGTTACCAGGTGCCATTACGTCACAGCTGGATAAGGCTTCCATTGTCCGGCTTACAATCAGTTACCTGAATATGAAACAGTTTGGTCGAAGAAGAGTTAAACGTTATCGTCAGGCATCAACCTGCTCGGTTCTGTCAGAGTCGTCAATGTCACCCCTGTCTGATGTTGATGTGGATGGAAGTCTAGCAAGTCCTTCCCCGCCATCCTCCATTTCTTCACCGCCACCTACTGCCAGTACATCGGCAGCTGCTACCATTGTTCCATTTAATCAGGGTACTGCCAGTTATAGCGACCTCGCAGCTAACAGTGGTATCTTTTTACTACAGGCACTGGATGGTTTCCTGTTTGTTCTATCCAGCGATGCAAAAGTCCTTTACGTTTCAGAGACTGTGTCTGTGCATCTTGGATTGTCACAGGTTGAACTGACAGGAAGCAGTATGTTCTGTTATATTCACCCAGAGGATCAACAGGATCTCATCAATGTGTTGGAGGCTGCGAAGGAAGAATTAGAAAATAACAGTACTCAGTCTGCCGCCCCCGGGAGGTACACAGATGATATTCCCTTCTTTGGGAATCAGCAAGAAAGTTTTTTAAATGAGGACGGCCGTCCTAATAAAGAGAAACCAAAATCATTCTTCTTACGAATGAAGTGCACTCTAGTAAGACGAGGAGGATCCTATACCAAATCCTCTGGGTTCAAGGTTATTCACTGTATGGGAAGAATGAAGAGATACTCTACTGGGGGTATTCCTGGTCCAAAGTATGCATTTGTGGCCATCGCACAGCCACTGCCGACAATGAACATCAACGAGCTTCCACTGGAGTGCAACATGTTTGTGAGCCGAGTAAACATGGACCTAAAGATTGTTTATTGTGAAGGAAGAATTCACAAGTTTATGGATTACTTTGCTAGAGATATTGTTGGCATGTCTGCTTACGATTTTTACCATGGCAATGATGTTGCTGTGATTCAAGGCCACCATGCAAAATTTCTTACAAAGGGCCAAGTCCTTACAAAGTACTATCGCTGGATGAACAAAAATGGTGGTTGGGTCTGGATGCAAACCAAGGCATCACTTATTCCACATCCTACAAATCCGGAGCTGAAACAAATGTTATGTCTGAATTACCTTGTCAGTGAAGTGGAACACCGAGGTGTTGTGCTTGGAATGGCTCAGTTAGAAGACAAACCAGCTCTACATCCTAAAGCTTACATCACAGAGGTGGAAAATGAGTCTGATGTCACTGGCGATCTCAAAGACGCTCAGTATGATGACCAAGTGATGGTTTATCCAAAGTGGCACGAGACCTCCGACAACCTTGTCCCTAAACCAACACTTCTGGATTCATTGGCCCTTACACGATCCGGTTACCCAACAACCACTGGGGCTGACGCAACCGGACTTGAAAACGATGTATTCACCACTTCAGCTGAACCTTGGGGTCAAGCTAGTACCAGTACCTGGAGTTCGGCTGGCAGGCTCAATGAACTTTCCAGGTCTGATGGTCTCCTTGGCAATGGAAGCTCCTCAAGTACCATAGATGACGATTTTGATGACTGGGCAAAGATGATCAATGCGGAATTGAACGAGTTAGATCGAGACATTGTTAAGTATGTGGCAACCGGTGGTGATGAGATTGTTCAGTTGCCTGACACTAGCCTAGAAGTTCTTCTGAACACTGACAACCTCGATTTGCAAACAAATGCCGCCATCCAAAATCTGGTTGCACCCAAAATTGAAGAAATTCCCATGGACAGTGACTCCAATTCTACAGTTTCTTCTCTAACTCCTGTAAATGCACAAAGTATGCCTACTCCTAGAATGCCCTCTACAGCTTTTGTCTCAAACATGCCTATGGATACCTTTGCCGGTGACACCAAACCAAGTTTGATGCCCATGAATCAAGGTGACTTGCAAGAGAGAAGTCTTGGGTTTACTGGTTCAAAGCTTCGCGGGATGAACAGCCCTTGCATGTTTAGCAATGCAAACTCGACTGGTGAGAGAAATTACCAGCAGAAAGCACCAGCTCTGAGTCATTTGAATTCTTCACCTTCTTCAAATGCACCTGTGCAGCTCCTGCAAATGCAACCAACTCAAACCATTCAGCCTGCTCGAGATCCAAATGCTATGAAGACGACGCAAAGTAGAAATGCTGGAAGGATGCCGCAAATGCCTAGAAGTGATATGACATCAACAGGCGGTGGAAACTTCAGAGTTCCAGCTCCTGTTCCGCAAATGCCAAGGCAAAATGATTTGCAACAGCAACTCTTTCAAGAGCTCAGGGGATTGATTCCCGAAGACATGTGCTACACCGACCAAATGGTGGTTGACTTGGTCGATGATATGATGTTAGATGCAGATAAGAGAAAAGACGAGGACAAACAACTTGCATCACTTCTGCAGCAAGGAGGCTTTGTTCAAATAGAAGAAATACCCGAAATCGAAATCAAACAAGAAGTGGTGACACCGACATTACCGCAGCCAACAAGCTCATTTCCTAGCTTCTCTGACAGCTTGGCAAACCAGAGTAGTCAACCTCAAGTGCTAAGTAGCTCTACATCTTCCTTTACTTCAACAGATCCCTTCAACCAACTTTCCGGCAACCATTCTACATATGGGGCTGCACCTACTAGAAGGCCGCAAAACGGAACTGTTCACAATCAAAGCCCTCCTGTAAGGTTCCAAAATGGCAATTCTCAGTTTGTTAATCAAGGGGACAATAACATGAACTTTTTAAACTCTTTGTCAAATGCAGGAGTTACCAGTACACAAACTGGTGCACCCATGCCAAGCAACAATCTGTGGAACTCTAACCCACCCATAAAGCAAAACGTTATGCAACAAGGATTAAGAAACTTGCTGCAAAGCACAGGCAGCCCACCACCGAAGCAAACCACAAACTTTCAAAATACTCAAGTGAACTCTGGCATGATGGCGCAGCAGCCAAACATGCCCTTCTTGCCACAGCAAAATGTCGCAAACATGGTGCCACAGAATGGTTCCCTTAATACTCAAAGTAATTTGTTTAACATGACGGTAGTTCCCAATGTAGACCAGATGAATCTCCAGGAACTTAACCAAATGAATGCTCTCCTCCAATCAGTACCTACCTTGCCAACTTCAAGCTATCAGAACATCAATGGCACGAACATGAACATCGGAAATCAGCATTACCAAAAGTTTGACATGAACAGAAAACTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QZQ0	Neuronal PAS domain-containing protein 3 OS=Mus musculus OX=10090 GN=Npas3 PE=1 SV=1
Q8IXF0	Neuronal PAS domain-containing protein 3 OS=Homo sapiens OX=9606 GN=NPAS3 PE=1 SV=1
Q99742	Neuronal PAS domain-containing protein 1 OS=Homo sapiens OX=9606 GN=NPAS1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005333 (this species only)
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00989 all species →	PAS	PAS fold	Domain	Interproscan
PF14598 all species →	PAS_11	PAS domain	Domain	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR013767 all species →	Domain	PAS fold	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR001610 all species →	Repeat	PAC motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23043 all species →	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap11.242.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.