Gene detail

Detailed information of evm.model.Ap11.314 in Astrangia poculata

Genomic Location: Ap11:3887819...3902428
NR annotation: CAH3022032.1, unnamed protein product [Porites evermanni]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.314

atggccggcatcccgagtccagatgaaatcctccgctcgacgactggaaaagcaaattttcaacgtgttgcacgccttattataagtggaggcacctcattatttagagagatttttgacatcagatgtccaccctgtaatcttcccacaatcctgaaaaatccagccacagtgagacaactcaaagcagcaaagcttaccaagccacagtgggattgtctttatccttccccaggggtgtacggcaagtcaactgactttgatgttactttgctcttcaagcttcttaggacaatatgcagtctctcccctccagtcacgggctgggatacccttccagcaagcacagaccacagtttagctgcagatttagcgagaattaaatattaccgcaactctgtgtatggtcacgtgagccaaaacatggaaataacagatgaagagtttccattgctttggcaagagatacgcgattcccttgtcagagttgcaggacaaatcagccctacaaagaaaacggagtggcagggggccattggtaattttttaaaggatcctctcacagcagaggatgaacaaaatgtacaggaactcctgaggtggtatgaaaacgacactgaagttaagaaatcaatggatgaactaaaaaatacaactcaagaagggatagaacgtttggagacaagtttagaagaaaaaaggcaaaacttggagatggcagttcgaggtgaagcccaagaaatgaaagctgatctgggagagcaactacacaccacaactgaagtagttcaggaaggaatccaacgtttggagacaagattaaaccttgttcagggagcactagaagggacatcgcgtggaattgagacagtagctcgaaaagaatcccaagacattaaagagcaactacgaaaagaattgaaagcctcaactcttgaagttcaaaagagtttggattcaagtttaaaaggtgtccacggaggactagaaggaacaacgcgtgaaatagaaacagtacttcgagaaaaatcccaagacatcaaagaacagctaggaaaagaattgaaagcctcaactcttgaagttcaaaatagtttggagacaagtttaaaaggtgtccacggaagactagaaggaacaacgcatgaaatagagacagcagtacgagaacaagccctaaaagttcaaaagagtttgaaaggtgtccaggaaggactagaagaaacaacgcatgtactagaagccacagttcgagaggaaacacaagacatcaaagataagcttgaagaggtgcatcaatccatagacaagctcaactcccaagctgaaggctctggatcatctggagctcgtgttcgactgcggattgactgtgaaactatctctggacctggtgaacgaggaggatcctcaggaataacagtagcttcgcatggacgcgaagaaggaattcagagcacgacagtagcacccagagcagaggcgacaggagttctggaaaatgtgactgttggaaatgacggcctacccagtccacaaggagtactgagtttcattgctttaaaggccttccaacccgttgatccatctaaaccagaagagttaaatggctttctggaatatatggaaaaggttcgaaaagtgctgattgtggacaccaagctggggagcttgataatcacagtcgaatgtgaatctctggaaatacttgacaaattgtgggacgattactgtaccggccacctgaatgaaatggcacaagaattccttgtcacagaggacatactgaaggagcttggccttactcaagtgaaactatcctcaaccattcttgaggaggagtacagggcttgtcgagagtatttcttacaacattcagtgcactttccaagacacatgacaattttcgtcaaaacagtgactggaaagaccacgatcaccttaagcgttgttcctgatgattcaatccagaatgtgaaaaagaaaattatggatgcggttggaataccagtcgaacagcaacggcttacatttgacaacgaaatactcgaagatgaccgcagtttgagtgcctacaacatcctcaaagattcaaccctgcatttgatttcaatcaattgcggtactaacattcaaattctcgtggtaacgcaggctggcgagttgagcacgacagaagttgtgcctgatgatacaatcgaaaatttgaagaagaaaatacttggggaaaaagaaacaccagtcgaatgtcaacgcgtctactatgctggaaaggaactcaaagattaccgcactctgaaagattacaatattcagagcggaccagccctggtcgtaactcgagatcctttgggcggcatgccaatctttataaagatgcttactgggaagacgattaccttaaacgttcaacctgaaacttccatcaagaatgtaaaagttgaacttcaaaaaagaaaaggcatcccagttgaggtacaacatctgcactttggtggtcagcaactcaaagatttccgcacgttaaaggactacaacattcagaccgaatcaaccttacatctaagacttaaaggccaatgtggtagtatgccaatttatgtgatgatgccaactggaacgatgactactttagatgtctttccaagtggtaatgttgagaacatgaaagacgaaatttacgaaaaagatgggatctcacccgacgagcaacatctcatttttgatggaaaggaactggaagatggccacaccttgagtgaattcaacattgagaaaggatcaatgctacatttggtgttgcaccaaaccgaagctaagcgcaactcctcgatcgagagccttcacgcgagagttgctttcccacggcacatgacaattttcattcagacccgaactgggaagaccatcatcacagtggatgttgaaccagacgataccgtcgaaaatgtgaaaaagaaaataacagatgagttaggaataccatccgaccagcagcggcttgcctttggcgacaaaatactcgaagatgacaacattctgagtgactacaacattctgaaggactcaaccctgcaactaattctaacacttcgtattcgcgtgaagatgacggctggaaaggtgatcacactagaagttaagccacaagataccatcaagaatgttaagaaaaaactatatcaaaaggaaggaataccggtcgaacatcactgcttcttttataatggcgagaaactcagagatcatattaccctgaaagactactgcatcaagggagaatcactgttgcatttgttgttgacgaaaagtcaagaagctcgtcttaacatgcagatcgattgcgaagtagtctcaagacccagtctacaaaaggaatctccagagatggcatcaacctcacgggaacacgaaggtggggtccagagtgccagagtgttacctgttacgtcacgtaaacgaaaggcggaggcgtcatggggttttcctacagaacagaacgttttgaaccttgctgcgttcaagtacttgaaaacaactgatacatcaaatggctttgtacagtatttaaagaaaagacacgtggagattgtggacgtgcaggcaggcagtttgataatcacagtggaatgcagctccgtacaaatgcttgacaaattgtggaacgactatttttctggctgtttaaatgaaatggcgcacaaattccttgtgacaaaggaaattctgaatgagcttggcctaagggaggttaaactcacaacgacaattccaagaaacgagtactgtgcatatcgacatcaattgcgtctttttattttaggtgaattgggattccttcttggcattctaagagggacacgttcatatggagcagcagcaacacgagaagtaccacaacccttactacttgaggaggagcgtttgatcaacttacaagaacagcttgagagctctggaaccactgatttcgaaatttcaacaatcacccaagcttttatcctagacgggctgcaagaatacccaagtgatgaagagatccagaggcggatcatgaatttcatggaaacaaagttcgctgaagcctgtttatcacagctgtaa

Transcript

evm.model.Ap11.314

ATGGCCGGCATCCCGAGTCCAGATGAAATCCTCCGCTCGACGACTGGAAAAGCAAATTTTCAACGTGTTGCACGCCTTATTATAAGTGGAGGCACCTCATTATTTAGAGAGATTTTTGACATCAGATGTCCACCCTGTAATCTTCCCACAATCCTGAAAAATCCAGCCACAGTGAGACAACTCAAAGCAGCAAAGCTTACCAAGCCACAGTGGGATTGTCTTTATCCTTCCCCAGGGGTGTACGGCAAGTCAACTGACTTTGATGTTACTTTGCTCTTCAAGCTTCTTAGGACAATATGCAGTCTCTCCCCTCCAGTCACGGGCTGGGATACCCTTCCAGCAAGCACAGACCACAGTTTAGCTGCAGATTTAGCGAGAATTAAATATTACCGCAACTCTGTGTATGGTCACGTGAGCCAAAACATGGAAATAACAGATGAAGAGTTTCCATTGCTTTGGCAAGAGATACGCGATTCCCTTGTCAGAGTTGCAGGACAAATCAGCCCTACAAAGAAAACGGAGTGGCAGGGGGCCATTGGTAATTTTTTAAAGGATCCTCTCACAGCAGAGGATGAACAAAATGTACAGGAACTCCTGAGGTGGTATGAAAACGACACTGAAGTTAAGAAATCAATGGATGAACTAAAAAATACAACTCAAGAAGGGATAGAACGTTTGGAGACAAGTTTAGAAGAAAAAAGGCAAAACTTGGAGATGGCAGTTCGAGGTGAAGCCCAAGAAATGAAAGCTGATCTGGGAGAGCAACTACACACCACAACTGAAGTAGTTCAGGAAGGAATCCAACGTTTGGAGACAAGATTAAACCTTGTTCAGGGAGCACTAGAAGGGACATCGCGTGGAATTGAGACAGTAGCTCGAAAAGAATCCCAAGACATTAAAGAGCAACTACGAAAAGAATTGAAAGCCTCAACTCTTGAAGTTCAAAAGAGTTTGGATTCAAGTTTAAAAGGTGTCCACGGAGGACTAGAAGGAACAACGCGTGAAATAGAAACAGTACTTCGAGAAAAATCCCAAGACATCAAAGAACAGCTAGGAAAAGAATTGAAAGCCTCAACTCTTGAAGTTCAAAATAGTTTGGAGACAAGTTTAAAAGGTGTCCACGGAAGACTAGAAGGAACAACGCATGAAATAGAGACAGCAGTACGAGAACAAGCCCTAAAAGTTCAAAAGAGTTTGAAAGGTGTCCAGGAAGGACTAGAAGAAACAACGCATGTACTAGAAGCCACAGTTCGAGAGGAAACACAAGACATCAAAGATAAGCTTGAAGAGGTGCATCAATCCATAGACAAGCTCAACTCCCAAGCTGAAGGCTCTGGATCATCTGGAGCTCGTGTTCGACTGCGGATTGACTGTGAAACTATCTCTGGACCTGGTGAACGAGGAGGATCCTCAGGAATAACAGTAGCTTCGCATGGACGCGAAGAAGGAATTCAGAGCACGACAGTAGCACCCAGAGCAGAGGCGACAGGAGTTCTGGAAAATGTGACTGTTGGAAATGACGGCCTACCCAGTCCACAAGGAGTACTGAGTTTCATTGCTTTAAAGGCCTTCCAACCCGTTGATCCATCTAAACCAGAAGAGTTAAATGGCTTTCTGGAATATATGGAAAAGGTTCGAAAAGTGCTGATTGTGGACACCAAGCTGGGGAGCTTGATAATCACAGTCGAATGTGAATCTCTGGAAATACTTGACAAATTGTGGGACGATTACTGTACCGGCCACCTGAATGAAATGGCACAAGAATTCCTTGTCACAGAGGACATACTGAAGGAGCTTGGCCTTACTCAAGTGAAACTATCCTCAACCATTCTTGAGGAGGAGTACAGGGCTTGTCGAGAGTATTTCTTACAACATTCAGTGCACTTTCCAAGACACATGACAATTTTCGTCAAAACAGTGACTGGAAAGACCACGATCACCTTAAGCGTTGTTCCTGATGATTCAATCCAGAATGTGAAAAAGAAAATTATGGATGCGGTTGGAATACCAGTCGAACAGCAACGGCTTACATTTGACAACGAAATACTCGAAGATGACCGCAGTTTGAGTGCCTACAACATCCTCAAAGATTCAACCCTGCATTTGATTTCAATCAATTGCGGTACTAACATTCAAATTCTCGTGGTAACGCAGGCTGGCGAGTTGAGCACGACAGAAGTTGTGCCTGATGATACAATCGAAAATTTGAAGAAGAAAATACTTGGGGAAAAAGAAACACCAGTCGAATGTCAACGCGTCTACTATGCTGGAAAGGAACTCAAAGATTACCGCACTCTGAAAGATTACAATATTCAGAGCGGACCAGCCCTGGTCGTAACTCGAGATCCTTTGGGCGGCATGCCAATCTTTATAAAGATGCTTACTGGGAAGACGATTACCTTAAACGTTCAACCTGAAACTTCCATCAAGAATGTAAAAGTTGAACTTCAAAAAAGAAAAGGCATCCCAGTTGAGGTACAACATCTGCACTTTGGTGGTCAGCAACTCAAAGATTTCCGCACGTTAAAGGACTACAACATTCAGACCGAATCAACCTTACATCTAAGACTTAAAGGCCAATGTGGTAGTATGCCAATTTATGTGATGATGCCAACTGGAACGATGACTACTTTAGATGTCTTTCCAAGTGGTAATGTTGAGAACATGAAAGACGAAATTTACGAAAAAGATGGGATCTCACCCGACGAGCAACATCTCATTTTTGATGGAAAGGAACTGGAAGATGGCCACACCTTGAGTGAATTCAACATTGAGAAAGGATCAATGCTACATTTGGTGTTGCACCAAACCGAAGCTAAGCGCAACTCCTCGATCGAGAGCCTTCACGCGAGAGTTGCTTTCCCACGGCACATGACAATTTTCATTCAGACCCGAACTGGGAAGACCATCATCACAGTGGATGTTGAACCAGACGATACCGTCGAAAATGTGAAAAAGAAAATAACAGATGAGTTAGGAATACCATCCGACCAGCAGCGGCTTGCCTTTGGCGACAAAATACTCGAAGATGACAACATTCTGAGTGACTACAACATTCTGAAGGACTCAACCCTGCAACTAATTCTAACACTTCGTATTCGCGTGAAGATGACGGCTGGAAAGGTGATCACACTAGAAGTTAAGCCACAAGATACCATCAAGAATGTTAAGAAAAAACTATATCAAAAGGAAGGAATACCGGTCGAACATCACTGCTTCTTTTATAATGGCGAGAAACTCAGAGATCATATTACCCTGAAAGACTACTGCATCAAGGGAGAATCACTGTTGCATTTGTTGTTGACGAAAAGTCAAGAAGCTCGTCTTAACATGCAGATCGATTGCGAAGTAGTCTCAAGACCCAGTCTACAAAAGGAATCTCCAGAGATGGCATCAACCTCACGGGAACACGAAGGTGGGGTCCAGAGTGCCAGAGTGTTACCTGTTACGTCACGTAAACGAAAGGCGGAGGCGTCATGGGGTTTTCCTACAGAACAGAACGTTTTGAACCTTGCTGCGTTCAAGTACTTGAAAACAACTGATACATCAAATGGCTTTGTACAGTATTTAAAGAAAAGACACGTGGAGATTGTGGACGTGCAGGCAGGCAGTTTGATAATCACAGTGGAATGCAGCTCCGTACAAATGCTTGACAAATTGTGGAACGACTATTTTTCTGGCTGTTTAAATGAAATGGCGCACAAATTCCTTGTGACAAAGGAAATTCTGAATGAGCTTGGCCTAAGGGAGGTTAAACTCACAACGACAATTCCAAGAAACGAGTACTGTGCATATCGACATCAATTGCGTCTTTTTATTTTAGGTGAATTGGGATTCCTTCTTGGCATTCTAAGAGGGACACGTTCATATGGAGCAGCAGCAACACGAGAAGTACCACAACCCTTACTACTTGAGGAGGAGCGTTTGATCAACTTACAAGAACAGCTTGAGAGCTCTGGAACCACTGATTTCGAAATTTCAACAATCACCCAAGCTTTTATCCTAGACGGGCTGCAAGAATACCCAAGTGATGAAGAGATCCAGAGGCGGATCATGAATTTCATGGAAACAAAGTTCGCTGAAGCCTGTTTATCACAGCTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0CG68	Polyubiquitin-C OS=Sus scrofa OX=9823 GN=UBC PE=2 SV=1
P0CG50	Polyubiquitin-C OS=Mus musculus OX=10090 GN=Ubc PE=1 SV=2
P0CG78	Polyubiquitin-F OS=Dictyostelium discoideum OX=44689 GN=ubqF PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000498 (this species only)
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20694 all species →	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan
PF18738 all species →	HEPN_DZIP3	DZIP3/ hRUL138-like HEPN	Domain	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR019956 all species →	Domain	Ubiquitin domain	Interproscan
IPR049341 all species →	Domain	TRADD-like N-terminal domain	Interproscan
IPR041249 all species →	Domain	DZIP3-like HEPN domain	Interproscan
IPR050158 all species →	Family	Ubiquitin and ubiquitin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10666 all species →	UBIQUITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0019941 all species →	Biological Process	modification-dependent protein catabolic process	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0031386 all species →	Molecular Function	protein tag activity	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap11.314.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.