Genomic Location: Ap11:4278270...4290473
NR annotation: CAH3152458.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap11.358 |
| Transcript |
| evm.model.Ap11.358 |
| Protein |
| evm.model.Ap11.358 |
| UniProt accession | Description |
|---|---|
| O35867 | Neurabin-1 OS=Rattus norvegicus OX=10116 GN=Ppp1r9a PE=1 SV=1 |
| Q9ULJ8 | Neurabin-1 OS=Homo sapiens OX=9606 GN=PPP1R9A PE=1 SV=2 |
| Q96SB3 | Neurabin-2 OS=Homo sapiens OX=9606 GN=PPP1R9B PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004243 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00595 all species → | PDZ | PDZ domain | Domain | Interproscan |
| PF07647 all species → | SAM_2 | SAM domain (Sterile alpha motif) | Domain | Interproscan |
| PF17817 all species → | PDZ_5 | PDZ domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001660 all species → | Domain | Sterile alpha motif domain | Interproscan |
| IPR001478 all species → | Domain | PDZ domain | Interproscan |
| IPR043446 all species → | Family | Neurabin-like family | Interproscan |
| IPR036034 all species → | Homologous_superfamily | PDZ superfamily | Interproscan |
| IPR040645 all species → | Domain | Neurabin-1/2, PDZ domain | Interproscan |
| IPR013761 all species → | Homologous_superfamily | Sterile alpha motif/pointed domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR16154 all species → | NEURABIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0007015 all species → | Biological Process | actin filament organization | Interproscan |
| GO:0014069 all species → | Cellular Component | postsynaptic density | Interproscan |
| GO:0015629 all species → | Cellular Component | actin cytoskeleton | Interproscan |
| GO:0019722 all species → | Biological Process | calcium-mediated signaling | Interproscan |
| GO:0030425 all species → | Cellular Component | dendrite | Interproscan |
| GO:0031175 all species → | Biological Process | neuron projection development | Interproscan |
| GO:0051015 all species → | Molecular Function | actin filament binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17551 | PPP1R9; neurabin | - | Cytoskeleton proteins | ko04812 | deepkoala |
Transcript abundance of evm.model.Ap11.358 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
