Genomic Location: Ap11:4680731...4715316
NR annotation: XP_020610965.1, mucin-19-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap11.389 |
| Transcript |
| evm.model.Ap11.389 |
| Protein |
| evm.model.Ap11.389 |
| UniProt accession | Description |
|---|---|
| P39059 | Collagen alpha-1(XV) chain OS=Homo sapiens OX=9606 GN=COL15A1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002240 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01391 all species → | Collagen | Collagen triple helix repeat (20 copies) | Repeat | Interproscan |
| PF06482 all species → | Endostatin | Collagenase NC10 and Endostatin | Domain | Interproscan |
| PF20010 all species → | Collagen_trimer | Collagen trimerization domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008160 all species → | Repeat | Collagen triple helix repeat | Interproscan |
| IPR050149 all species → | Family | Collagen superfamily | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR010515 all species → | Domain | Collagenase NC10/endostatin | Interproscan |
| IPR016187 all species → | Homologous_superfamily | C-type lectin fold | Interproscan |
| IPR016186 all species → | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| IPR045463 all species → | Domain | Collagen type XV/XVIII, trimerization domain | Interproscan |
| IPR048287 all species → | Domain | Thrombospondin-like, N-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24023 all species → | COLLAGEN ALPHA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0031012 all species → | Cellular Component | extracellular matrix | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K19721 | COL5AS; collagen type V/XI/XXIV/XXVII, alpha | - | Glycosaminoglycan binding proteins | ko00536 | deepkoala |
Transcript abundance of evm.model.Ap11.389 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
