Gene detail

Detailed information of evm.model.Ap11.4 in Astrangia poculata

Genomic Location: Ap11:55802...60431
NR annotation: XP_020609450.1, myotubularin-related protein 10-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.4

atggcagcattaagaagttcttctcccttgtctgaagatggttaccctgaaccgtcattattaccaggagaaatcgttgttgccaaagctataaatgtgttacgattccaaacaatggccgacaggaagtccggaatatctggagtgctctatgcaacaaacttccgtatgtcattcttgacaaggaaccccagtgcagagacccagcttaactctgtattccagtcaaatccagatttaactgaagctggtgaaatatactcggatatgcaaagagaactgcacattccacaaacttgtataaatgagattttctactactccagttccacggcagagggatcaaaaataaagaaagtaaatccaggatcacgaacctcatccaaagtccattccttggaaattcgctgcaaggactttcgagtggttagatttggattgaaatttacacccaagaaagaccatgtgaagatggtgaatgcgattgcacattacaaggcaccgagcaatatcattctgctgtttgcattcccatacagcatggcgcggaactcttcagaaaacggcaaagccagactgaacaccatcccgacatttagaactcttcctgattggttaaatgagctgtcaaggcttcaggttgacgacacttggagagtagcaactgtcaacagcaaattcaaaacatgtccgtcactgtctgagatgtttgttgtgctcgcatccctgtcagattcagacatcaacagaatgtcattacattatgtggattcacgccttcccatatggtgttggagtcatcccaaaactggggtacccatgctgtatagtggagcaggaaggccagaaagtatatttcttgagaaggaggagacatctttcttcagagcattgtcgttgattccctgcaacactgagcacaaggaagtgaaggtcattaacttaatgaagacatctccaacaacaaaagaacttcaacaaagttttctgaagctcagagaactgtgcatgttggagacaagcaaggacttttggagcattgatccacattggctgtcaagtgtagaaacatgcagatggcttaactacttgcgcctgtcacttgttgccgctatggatgctgtgacatcaatttgttgtgaccgttcacctgtaatcatcaaagaacctggaggccgcgactttgtgctggttgtaggaagccttgcacagctgatagtggactcgtattacagaacaataagaggtttccaaactcttatccagaaaatgtgggtccttggtggacatcagtttctcttgcgctgcaatcacatcagtgaatcaaaccaggaaaatgacaaggaagattcaggagagtcgccagtgtttcttcacttcattgactgcgtgtatcaactcactcagcagttcccatcggagtttgaattctctgagacgtatcttcacgcactgcttgacacaatgcatgcatgcatgtttgatacgttcttgtttgactctgagaagcaaagagcagagctgtgtgacgttgaacttcgaggagattccatggcaacactttgggaatttgttgctgagcagcttgcagagtcccgtaactcagggccttatctgaatccattgtttgagtacagaaactctttagatgatggtgaagcaaatggaataaatgcagaaacatacttaagagtgaacacgcttgctccaggcatcaaattctggtccggtcgttatctcagatggcttccaacagttcatgtgagcactgggatgggagagaattcctcattacatttccagcagatgatccttgtcaatgagttcagggtattgcggcatcgtttggctgtgaacaagtatgaacaaactcctaatgcacatgctgttgatggtgacaaaactcttgatgtagatgctactgattttgacttcagtactgatttcagcttggacttggaaacaagcaagttgcttactcctagcatgccgtttattggtgatttggcacttaacaagtattactctcctggagatttgccaccaaatggatctgcagacaacagtgtagatgtgggcaagatttaa

Transcript

evm.model.Ap11.4

ATGGCAGCATTAAGAAGTTCTTCTCCCTTGTCTGAAGATGGTTACCCTGAACCGTCATTATTACCAGGAGAAATCGTTGTTGCCAAAGCTATAAATGTGTTACGATTCCAAACAATGGCCGACAGGAAGTCCGGAATATCTGGAGTGCTCTATGCAACAAACTTCCGTATGTCATTCTTGACAAGGAACCCCAGTGCAGAGACCCAGCTTAACTCTGTATTCCAGTCAAATCCAGATTTAACTGAAGCTGGTGAAATATACTCGGATATGCAAAGAGAACTGCACATTCCACAAACTTGTATAAATGAGATTTTCTACTACTCCAGTTCCACGGCAGAGGGATCAAAAATAAAGAAAGTAAATCCAGGATCACGAACCTCATCCAAAGTCCATTCCTTGGAAATTCGCTGCAAGGACTTTCGAGTGGTTAGATTTGGATTGAAATTTACACCCAAGAAAGACCATGTGAAGATGGTGAATGCGATTGCACATTACAAGGCACCGAGCAATATCATTCTGCTGTTTGCATTCCCATACAGCATGGCGCGGAACTCTTCAGAAAACGGCAAAGCCAGACTGAACACCATCCCGACATTTAGAACTCTTCCTGATTGGTTAAATGAGCTGTCAAGGCTTCAGGTTGACGACACTTGGAGAGTAGCAACTGTCAACAGCAAATTCAAAACATGTCCGTCACTGTCTGAGATGTTTGTTGTGCTCGCATCCCTGTCAGATTCAGACATCAACAGAATGTCATTACATTATGTGGATTCACGCCTTCCCATATGGTGTTGGAGTCATCCCAAAACTGGGGTACCCATGCTGTATAGTGGAGCAGGAAGGCCAGAAAGTATATTTCTTGAGAAGGAGGAGACATCTTTCTTCAGAGCATTGTCGTTGATTCCCTGCAACACTGAGCACAAGGAAGTGAAGGTCATTAACTTAATGAAGACATCTCCAACAACAAAAGAACTTCAACAAAGTTTTCTGAAGCTCAGAGAACTGTGCATGTTGGAGACAAGCAAGGACTTTTGGAGCATTGATCCACATTGGCTGTCAAGTGTAGAAACATGCAGATGGCTTAACTACTTGCGCCTGTCACTTGTTGCCGCTATGGATGCTGTGACATCAATTTGTTGTGACCGTTCACCTGTAATCATCAAAGAACCTGGAGGCCGCGACTTTGTGCTGGTTGTAGGAAGCCTTGCACAGCTGATAGTGGACTCGTATTACAGAACAATAAGAGGTTTCCAAACTCTTATCCAGAAAATGTGGGTCCTTGGTGGACATCAGTTTCTCTTGCGCTGCAATCACATCAGTGAATCAAACCAGGAAAATGACAAGGAAGATTCAGGAGAGTCGCCAGTGTTTCTTCACTTCATTGACTGCGTGTATCAACTCACTCAGCAGTTCCCATCGGAGTTTGAATTCTCTGAGACGTATCTTCACGCACTGCTTGACACAATGCATGCATGCATGTTTGATACGTTCTTGTTTGACTCTGAGAAGCAAAGAGCAGAGCTGTGTGACGTTGAACTTCGAGGAGATTCCATGGCAACACTTTGGGAATTTGTTGCTGAGCAGCTTGCAGAGTCCCGTAACTCAGGGCCTTATCTGAATCCATTGTTTGAGTACAGAAACTCTTTAGATGATGGTGAAGCAAATGGAATAAATGCAGAAACATACTTAAGAGTGAACACGCTTGCTCCAGGCATCAAATTCTGGTCCGGTCGTTATCTCAGATGGCTTCCAACAGTTCATGTGAGCACTGGGATGGGAGAGAATTCCTCATTACATTTCCAGCAGATGATCCTTGTCAATGAGTTCAGGGTATTGCGGCATCGTTTGGCTGTGAACAAGTATGAACAAACTCCTAATGCACATGCTGTTGATGGTGACAAAACTCTTGATGTAGATGCTACTGATTTTGACTTCAGTACTGATTTCAGCTTGGACTTGGAAACAAGCAAGTTGCTTACTCCTAGCATGCCGTTTATTGGTGATTTGGCACTTAACAAGTATTACTCTCCTGGAGATTTGCCACCAAATGGATCTGCAGACAACAGTGTAGATGTGGGCAAGATTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TPM9	Myotubularin-related protein 10 OS=Mus musculus OX=10090 GN=Mtmr10 PE=1 SV=2
Q9NXD2	Myotubularin-related protein 10 OS=Homo sapiens OX=9606 GN=MTMR10 PE=1 SV=3
Q6NU08	Myotubularin-related protein 10-B OS=Xenopus laevis OX=8355 GN=mtmr10-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007407 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06602 all species →	Myotub-related	Myotubularin-like phosphatase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR010569 all species →	Domain	Myotubularin-like, phosphatase domain	Interproscan
IPR030564 all species →	Family	Myotubularin family	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10807 all species →	MYOTUBULARIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004438 all species →	Molecular Function	phosphatidylinositol-3-phosphate phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18085	MTMR10_11_12; myotubularin-related protein 10/11/12	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.