Gene detail

Detailed information of evm.model.Ap11.858 in Astrangia poculata

Genomic Location: Ap11:9394407...9432462
NR annotation: CAH3132112.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.858

atgaatccaataaaggaacaagaagaagccaaagatgactttgctaagggaattgcgtatttttggcggtcaacgaacttagaacctcacattagaagcgtagcattatgtgctgggatatcgaaggtagccttaggaaacagtcatactttgctccttacgtttaactcggagttactctctgtcggagataattcttttggccagcttggtcttggcgatggtaaaccgcgtcgagaaccgacgcaagttgatttttttcgcgacaaacgtgtgctggacatttgttgtggtggtcatcacagtggtgttatttgtgcaaacaatgaagtgtacttttggggagactcgtctagtggacagtgcggtatcggcgatataaaatcggctaaccaaccttcacgagtccagtttgaacgatataacatccctgataccagacaaacacatcttcttacacaacaagataaagacagtaaaaagaaagagcctgtgattacacaaattgcatgtggtgattcccactcactggcgctttccattgaaggtgaaatttggtcatggggtactggctgtcagctgggacatggtacggagatagacaaagtaacaattcctaagcaaatagagcttttaattggaaagcatgttacgtcagtttgctgtggagcataccatagtttagctgttattcaagaggatcaatcatgccctactttcatgaattcatgtagtgatagagacgtaacatcacagccagcaaaaacaccaaagcgggggaagaagtccaaaaagaagcagaggaaaccatccaagggatcaccacaaaaaagccaagtcacaggacaacatgaatatcatagaactttaacagacgacgctggttctggtttattgaacattgagaagccaagtatcgcacgaacttatctcagctacgtgcctgttgtaacagagaagagtactgaaggcgtatttgagattgtggccaataaaccacctattttggagcaagatcaggataaagaaaatgcctcaaacaaagaaaaacagaacttggattcattagataatgctgacttatacactgttgttaacagccaagatgaggcgcctgaaatggcatgtcactcatctcttggtaaaagtactcccaatgatattaattttgcatcactagaggaaactactgacaaatacgtcaacatcaactgtgaacataccaagtgtttgaaagaaacacagactgttgcctctgtcgaaacttcaaaatcaaatgaaaatgtttctaatttatatacaccagatgaaagcccctctctagtaactttatcaagtcctttaagtgatatgagcatttcatattttgcaagcactgattcagactctgaggattctcttactaaagtaagtcaggaaaagaaaccatcacaaactgcagtaactagaaagtattcatctggtttttacagtgccattagtagcagacttatcagacctgatgtgaacctcagcaaactgacaagtgcagtagtgggatcagttactgggatgtttacaacatcaggatctgtaccaggacagttctctcataatgatcctcctggagcggtgatagtaaaggtgccttgtaaacagtgtggattgcttggtctttgtctgtgtgatgctgatggaagcaaattcaaaatggctggtgcaaacactcaggtttggtcatgggggaggggaggctgtggacagcttggcctgggagatacagaagatagattttacccatgctgtgtgaaagagctcagtgatgttggagtgatcaagttagcagctggaaccttccactcattggctcaaacagtttgttctcaggtcttctcctggggagacaactcttgtggtcagttaggacgtaagaaaagcatggctttacaacctaaaaaaatcagatgtttttcagatgtcttggtctgggacattgcagctggaagtcattactccttatttattggcgacatggctatcagtaagcctgatgtttatgtctgtggacgtcaaccaagtgcaatgccaagtgtggctgcgactatgaacagcatcagagagagtacatctctgccatctttagccagtgatgatgacactacagcaacaccaatcaaggcaacagataaaagggtgttatcttcatcacactcttttgacgacacaaaagaacgatcccttcagcacagcagggtggaaattgtcagactcaccatgtttagaacggttggacagctgcagaatgtaactgcaaacacagaacactgtgcttgtctagcagccagtgataagagtgggaagtttgaaattatgagtgaacttgctagtaaagagagattattttactatcagctggctcttatttggcaggctgttttgacaccattgctacaatcagaagtatggtcatgcctggccctacaggaggtggggcaagtgttagctcctgtaatccagtctttttatggcatcatgaagtgtgtctccacaagtctgacagctgttaaccaactcgtggtatcaatgaagagcttccatgaattatttaaactgtgctggtctgatgagtttttacaagcttttgagaggtattctgaatgcttcagtaatggagtggcatttggtgtttttacagcattttcaaatgtatcaagtgatataacatctcagagtagatctgtcttgagtgatatcttggatgatacaacacaggaatttgtgagtgatgacaatgcattccagtatatgatgcagttcccactgttaaagatgcagcattaccaacttattgtgggaaaattacacagcacattacaaatttctgaggcaaacatagtggactgtgcaagactaaaagaagaggctgaaagatgggaatcttcaacacgagatgaagaaatctttaagcaccctcacagaagactgttaagaagcagccatgtacacagcctttttcctgctaaagggacaaggttttcaacacccctgtttgtgttatttgatgacttctttgtcttctaccagtctgccaagaactttcaagcctttccactggctactgtatgggctgaaggcattgataacacagaaggactcattaatggcattaaaatcacaacgccagaagagattttgcttgtttgtgctccatcaacagtcgacaagactgattggttgctaaccattaatcacgcaatagctaatgtgatttccaagacaacaacatacagacttggagtagagtctctcaataagacgaccggaagtctggcaccagctgtggctagagaagcttcttacacatatgagcatgactctgtttatcgtggagctacttattatggaatgtggctactgggaaagcctcacggacatggtgaaatgcattggtctgatggtcgacactacacaggggaatttaaacatggtgtacaacatggtgaaggcattatgattttcccgcccaactttgctgacaattcgggagaaaagtatgagggtcagtggagagaaggcaaaatgtctggttatgggaaattaagtttttccaatggtgatgtgtatgtgggtcactgggttgataaccaacgttctggtcatggtagtatgaagtctggtgccatgtctccctcaggggcaacactttacatcggtgaatggctttgtgacaagcgttctggctatggagtgctagatgatatactcagaggagagaagtatatgggcatgtgggaggcagactgtcgtcatggttcaggagtgcttgtaacgcttgatggcatctacaaccaaggaacctttgtacagaacaaactcagtggtgatggtgttctactgtgtgacgataacacaaaatttgaaggagaatttgttggggagtgtttgttgtctggcaagggagtgcttacaatgccaaatggagactacatagagggtacattcacgggtcaatggggagaaggaataagaattaatggcacatttcacaaactagaggcgctaaacacagccaaaagttcgccaaggtctaccctgacaaacaacaaatatgttattccacctgagaagaagtggatatcattattttctcagtgccgtcaagccctcggttgttccagtgaccaggatgctgacctgaaggtcgtgtggcagtccatatcagtcgccttaaaaaccaagcgtgactcaaaactgtcacattgtgaccaggaaatactccaagacttgttgaacatcaacaatgagatggaacaaagtgctaaagtcactgtggacttgcaacaattgcatttatatctaacaaaggcgtttgacataaagcaacaccctttgggtcaacttgttaatggtttgattgatgtatttcgagccagttatgttggcatgggcactcacaggaggctgctgcctcttgctgtagctgaggttaaatcatttgttgtcagagtatacaacattgtgcgtctgttattccctgagctccccaatgaggagtatgtccacttacatgcagacacggtgtctggtgtagccagtcacggcacagaagagagctggaccagcagcatgatgatgcatcccctgctctttcccaggctctatccaccactgttcacattgtatgcgttggaaaatgagcgagcagacagtgcatactgggaacgaatccagcagctaaacaagcgctcagactgggcactaatgacctatgtgggcatgcaaaggcagttttggcttacaaacgaacaagatgttggtagtcgctcagatgaggtgaaactggaaaacagacagcccgagcactacgtcagtgctgtagaatcccttcaacagattagtacaaaatttagtccaatggagaagcttggagttctaaagtcaacgtttgaacagatcaataaagatgttagttcattctggcaaggagagaaaaaactgatgtctctggacgatttgttccctgtctttcagtttgtggtcatcagggcaaggattcctcacctaggttcagaaattcagttcattgacgacatggtggacagtcatgtgcatgtaggagaacaagggcacatgtttaccactcttaaggcttcttttttccagattcaaaatgagaaaggctga

Transcript

evm.model.Ap11.858

ATGAATCCAATAAAGGAACAAGAAGAAGCCAAAGATGACTTTGCTAAGGGAATTGCGTATTTTTGGCGGTCAACGAACTTAGAACCTCACATTAGAAGCGTAGCATTATGTGCTGGGATATCGAAGGTAGCCTTAGGAAACAGTCATACTTTGCTCCTTACGTTTAACTCGGAGTTACTCTCTGTCGGAGATAATTCTTTTGGCCAGCTTGGTCTTGGCGATGGTAAACCGCGTCGAGAACCGACGCAAGTTGATTTTTTTCGCGACAAACGTGTGCTGGACATTTGTTGTGGTGGTCATCACAGTGGTGTTATTTGTGCAAACAATGAAGTGTACTTTTGGGGAGACTCGTCTAGTGGACAGTGCGGTATCGGCGATATAAAATCGGCTAACCAACCTTCACGAGTCCAGTTTGAACGATATAACATCCCTGATACCAGACAAACACATCTTCTTACACAACAAGATAAAGACAGTAAAAAGAAAGAGCCTGTGATTACACAAATTGCATGTGGTGATTCCCACTCACTGGCGCTTTCCATTGAAGGTGAAATTTGGTCATGGGGTACTGGCTGTCAGCTGGGACATGGTACGGAGATAGACAAAGTAACAATTCCTAAGCAAATAGAGCTTTTAATTGGAAAGCATGTTACGTCAGTTTGCTGTGGAGCATACCATAGTTTAGCTGTTATTCAAGAGGATCAATCATGCCCTACTTTCATGAATTCATGTAGTGATAGAGACGTAACATCACAGCCAGCAAAAACACCAAAGCGGGGGAAGAAGTCCAAAAAGAAGCAGAGGAAACCATCCAAGGGATCACCACAAAAAAGCCAAGTCACAGGACAACATGAATATCATAGAACTTTAACAGACGACGCTGGTTCTGGTTTATTGAACATTGAGAAGCCAAGTATCGCACGAACTTATCTCAGCTACGTGCCTGTTGTAACAGAGAAGAGTACTGAAGGCGTATTTGAGATTGTGGCCAATAAACCACCTATTTTGGAGCAAGATCAGGATAAAGAAAATGCCTCAAACAAAGAAAAACAGAACTTGGATTCATTAGATAATGCTGACTTATACACTGTTGTTAACAGCCAAGATGAGGCGCCTGAAATGGCATGTCACTCATCTCTTGGTAAAAGTACTCCCAATGATATTAATTTTGCATCACTAGAGGAAACTACTGACAAATACGTCAACATCAACTGTGAACATACCAAGTGTTTGAAAGAAACACAGACTGTTGCCTCTGTCGAAACTTCAAAATCAAATGAAAATGTTTCTAATTTATATACACCAGATGAAAGCCCCTCTCTAGTAACTTTATCAAGTCCTTTAAGTGATATGAGCATTTCATATTTTGCAAGCACTGATTCAGACTCTGAGGATTCTCTTACTAAAGTAAGTCAGGAAAAGAAACCATCACAAACTGCAGTAACTAGAAAGTATTCATCTGGTTTTTACAGTGCCATTAGTAGCAGACTTATCAGACCTGATGTGAACCTCAGCAAACTGACAAGTGCAGTAGTGGGATCAGTTACTGGGATGTTTACAACATCAGGATCTGTACCAGGACAGTTCTCTCATAATGATCCTCCTGGAGCGGTGATAGTAAAGGTGCCTTGTAAACAGTGTGGATTGCTTGGTCTTTGTCTGTGTGATGCTGATGGAAGCAAATTCAAAATGGCTGGTGCAAACACTCAGGTTTGGTCATGGGGGAGGGGAGGCTGTGGACAGCTTGGCCTGGGAGATACAGAAGATAGATTTTACCCATGCTGTGTGAAAGAGCTCAGTGATGTTGGAGTGATCAAGTTAGCAGCTGGAACCTTCCACTCATTGGCTCAAACAGTTTGTTCTCAGGTCTTCTCCTGGGGAGACAACTCTTGTGGTCAGTTAGGACGTAAGAAAAGCATGGCTTTACAACCTAAAAAAATCAGATGTTTTTCAGATGTCTTGGTCTGGGACATTGCAGCTGGAAGTCATTACTCCTTATTTATTGGCGACATGGCTATCAGTAAGCCTGATGTTTATGTCTGTGGACGTCAACCAAGTGCAATGCCAAGTGTGGCTGCGACTATGAACAGCATCAGAGAGAGTACATCTCTGCCATCTTTAGCCAGTGATGATGACACTACAGCAACACCAATCAAGGCAACAGATAAAAGGGTGTTATCTTCATCACACTCTTTTGACGACACAAAAGAACGATCCCTTCAGCACAGCAGGGTGGAAATTGTCAGACTCACCATGTTTAGAACGGTTGGACAGCTGCAGAATGTAACTGCAAACACAGAACACTGTGCTTGTCTAGCAGCCAGTGATAAGAGTGGGAAGTTTGAAATTATGAGTGAACTTGCTAGTAAAGAGAGATTATTTTACTATCAGCTGGCTCTTATTTGGCAGGCTGTTTTGACACCATTGCTACAATCAGAAGTATGGTCATGCCTGGCCCTACAGGAGGTGGGGCAAGTGTTAGCTCCTGTAATCCAGTCTTTTTATGGCATCATGAAGTGTGTCTCCACAAGTCTGACAGCTGTTAACCAACTCGTGGTATCAATGAAGAGCTTCCATGAATTATTTAAACTGTGCTGGTCTGATGAGTTTTTACAAGCTTTTGAGAGGTATTCTGAATGCTTCAGTAATGGAGTGGCATTTGGTGTTTTTACAGCATTTTCAAATGTATCAAGTGATATAACATCTCAGAGTAGATCTGTCTTGAGTGATATCTTGGATGATACAACACAGGAATTTGTGAGTGATGACAATGCATTCCAGTATATGATGCAGTTCCCACTGTTAAAGATGCAGCATTACCAACTTATTGTGGGAAAATTACACAGCACATTACAAATTTCTGAGGCAAACATAGTGGACTGTGCAAGACTAAAAGAAGAGGCTGAAAGATGGGAATCTTCAACACGAGATGAAGAAATCTTTAAGCACCCTCACAGAAGACTGTTAAGAAGCAGCCATGTACACAGCCTTTTTCCTGCTAAAGGGACAAGGTTTTCAACACCCCTGTTTGTGTTATTTGATGACTTCTTTGTCTTCTACCAGTCTGCCAAGAACTTTCAAGCCTTTCCACTGGCTACTGTATGGGCTGAAGGCATTGATAACACAGAAGGACTCATTAATGGCATTAAAATCACAACGCCAGAAGAGATTTTGCTTGTTTGTGCTCCATCAACAGTCGACAAGACTGATTGGTTGCTAACCATTAATCACGCAATAGCTAATGTGATTTCCAAGACAACAACATACAGACTTGGAGTAGAGTCTCTCAATAAGACGACCGGAAGTCTGGCACCAGCTGTGGCTAGAGAAGCTTCTTACACATATGAGCATGACTCTGTTTATCGTGGAGCTACTTATTATGGAATGTGGCTACTGGGAAAGCCTCACGGACATGGTGAAATGCATTGGTCTGATGGTCGACACTACACAGGGGAATTTAAACATGGTGTACAACATGGTGAAGGCATTATGATTTTCCCGCCCAACTTTGCTGACAATTCGGGAGAAAAGTATGAGGGTCAGTGGAGAGAAGGCAAAATGTCTGGTTATGGGAAATTAAGTTTTTCCAATGGTGATGTGTATGTGGGTCACTGGGTTGATAACCAACGTTCTGGTCATGGTAGTATGAAGTCTGGTGCCATGTCTCCCTCAGGGGCAACACTTTACATCGGTGAATGGCTTTGTGACAAGCGTTCTGGCTATGGAGTGCTAGATGATATACTCAGAGGAGAGAAGTATATGGGCATGTGGGAGGCAGACTGTCGTCATGGTTCAGGAGTGCTTGTAACGCTTGATGGCATCTACAACCAAGGAACCTTTGTACAGAACAAACTCAGTGGTGATGGTGTTCTACTGTGTGACGATAACACAAAATTTGAAGGAGAATTTGTTGGGGAGTGTTTGTTGTCTGGCAAGGGAGTGCTTACAATGCCAAATGGAGACTACATAGAGGGTACATTCACGGGTCAATGGGGAGAAGGAATAAGAATTAATGGCACATTTCACAAACTAGAGGCGCTAAACACAGCCAAAAGTTCGCCAAGGTCTACCCTGACAAACAACAAATATGTTATTCCACCTGAGAAGAAGTGGATATCATTATTTTCTCAGTGCCGTCAAGCCCTCGGTTGTTCCAGTGACCAGGATGCTGACCTGAAGGTCGTGTGGCAGTCCATATCAGTCGCCTTAAAAACCAAGCGTGACTCAAAACTGTCACATTGTGACCAGGAAATACTCCAAGACTTGTTGAACATCAACAATGAGATGGAACAAAGTGCTAAAGTCACTGTGGACTTGCAACAATTGCATTTATATCTAACAAAGGCGTTTGACATAAAGCAACACCCTTTGGGTCAACTTGTTAATGGTTTGATTGATGTATTTCGAGCCAGTTATGTTGGCATGGGCACTCACAGGAGGCTGCTGCCTCTTGCTGTAGCTGAGGTTAAATCATTTGTTGTCAGAGTATACAACATTGTGCGTCTGTTATTCCCTGAGCTCCCCAATGAGGAGTATGTCCACTTACATGCAGACACGGTGTCTGGTGTAGCCAGTCACGGCACAGAAGAGAGCTGGACCAGCAGCATGATGATGCATCCCCTGCTCTTTCCCAGGCTCTATCCACCACTGTTCACATTGTATGCGTTGGAAAATGAGCGAGCAGACAGTGCATACTGGGAACGAATCCAGCAGCTAAACAAGCGCTCAGACTGGGCACTAATGACCTATGTGGGCATGCAAAGGCAGTTTTGGCTTACAAACGAACAAGATGTTGGTAGTCGCTCAGATGAGGTGAAACTGGAAAACAGACAGCCCGAGCACTACGTCAGTGCTGTAGAATCCCTTCAACAGATTAGTACAAAATTTAGTCCAATGGAGAAGCTTGGAGTTCTAAAGTCAACGTTTGAACAGATCAATAAAGATGTTAGTTCATTCTGGCAAGGAGAGAAAAAACTGATGTCTCTGGACGATTTGTTCCCTGTCTTTCAGTTTGTGGTCATCAGGGCAAGGATTCCTCACCTAGGTTCAGAAATTCAGTTCATTGACGACATGGTGGACAGTCATGTGCATGTAGGAGAACAAGGGCACATGTTTACCACTCTTAAGGCTTCTTTTTTCCAGATTCAAAATGAGAAAGGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0C5Y8	Alsin OS=Rattus norvegicus OX=10116 GN=Als2 PE=1 SV=1
Q920R0	Alsin OS=Mus musculus OX=10090 GN=Als2 PE=1 SV=3
Q96Q42	Alsin OS=Homo sapiens OX=9606 GN=ALS2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002953 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02204 all species →	VPS9	Vacuolar sorting protein 9 (VPS9) domain	Family	Interproscan
PF02493 all species →	MORN	MORN repeat	Repeat	Interproscan
PF00415 all species →	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003409 all species →	Repeat	MORN repeat	Interproscan
IPR000408 all species →	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR003123 all species →	Domain	VPS9 domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR037191 all species →	Homologous_superfamily	VPS9 domain superfamily	Interproscan
IPR051984 all species →	Family	Alsin GEFs and Motor Neuron Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46089 all species →	ALSIN HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04575	ALS2; amyotrophic lateral sclerosis 2 protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.