Gene detail

Detailed information of evm.model.Ap11.92 in Astrangia poculata

Genomic Location: Ap11:1277321...1301210
NR annotation: CAH3161742.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap11.92

atgaagagcggtacaagcttcgttcttattttcttctcttcatgtatcgtcttcacttacgctttcgaggacgacgtccaagtaatcaacaatggttttggcgaccttcaatatgacacgttgaatccacttcactttgctaataaacaggagacggtttctgttgttaaacgtgatatcccgagtcacacagagacccgagtgcgacgtcaggtattagtgggaggcggaggaactagggtcgaggacctcacggccaggcaagactgtgatgggattctactacagtggaataggctcatgttaccatttaatccaaagaaacctacagccaatggagaatttaaacactttaacatttaccggagcgattcgtactttgacgatgtctcggttatgaagccgtacgtttcgggcgaacgggacacgtccctacagaacccgggaacagacagctacaaggacttgtaccccccgattaatatggagctttactatgctgtaacaattgtggatggagaagggcaggaggggaaagctgtggacgctaaaaagattgtgttcgtgggagcaatgcaaaagacaacacattccccattgtttaaaattgttccaggattccttagtcgcattggaaaggttttacatcacagcacggcgtggaatccaaatcgcaacgagtatcttgtcgcgtttgatttcgatgttgataatgatggtcaacccgaccagctctttgccctaaggcttgatactcagggtttaatagtggacaaacgaatgctgaatttcactgctaatatcaacaagaaagcaggaaatcaaggctggccatcagtagcttacagcagcattgctgatgaatacatgatcactttccagtttcgcgctggtgtcacacaatacttcaataacaaatatataatcatcagccagagagtgatgagctcgcagaccgagagggctgctgggccttcactgctagtgaaggctcacgggaagggaggtcctacacaatggatcgacgcaaagaatcctcttatcaagtacaacagcgtcacaggtggctatgtcggagctgtaatcgtggaagaatctcgatctcgcaaagaagtagttagcttgttcgttgactccaaaggcaaagtgcttaagactgagaatatctgtaacttcaaaggaagtggctttgagccaaatatcttcttcgactcgaagagaaacgaattcttcttcgtgtgcacagtggagagtggcggcgttgccaatgctgatttcaacctgaggtcggacgttcattcggtggttcttaccaaacgcgatgggcatggtgagcatgcgtctaacacagagagcgctgagacaaagaattttgttggatataccaataacacgcttgcaaagacaactgggtactacaatgagctcactgacagattgatcctattttgggaagataacgaccaaggcaagcccttcctagcaacagcctctgtgttactgactcgtcgacgttacatccggaaagtgcaaccgtacggttgcttagcaacgaagcgagtgagaacgccatcagcggtctactttcccttaaatggtaatcatttcctgttgtggcaagaacaaggttcaggagcttgggtgattgggggagagctcctacaaggtaacatgcaacttgcgtttggcagacagcagaagaaccctgtcacactttacaacaccaagatccaaggtgcattcgtcacgtggcaagaagaaggcgtgctattggcgcgccaggttaccatagcaacgcgacccctttgcagtccgctctgctcgtcacagcagaaatgcgcagtgcaagataaatgtgtatcaaagacgggagactcttgcacaattaacaatggtggttgcagtcacgtgtgcacctcattgcgtcactggaaagtacaatgttcgtgcccaggcgacatgcagcttatgggagacgggaaaacctgtcagagcgtccctccatgtcatggcatgactcccgtgaaaaacccggcgaccggaagtgactatttctgtggaagaggagctccaaggaacgtctgtcctgctaacacgtactgtcatatttcacctgttgatgcgtttgccaaatgttgtccagctcctttgcctagttattctgtgatagtcgccgccacatcgtcaatatggcagctattcatggacacaaaacaaaacagagccattttccaaaagctacagatagacaattctgaaatgattgtggcgttggattataacccagtagataagcgtgtatattggagtgataccacggctaatgcaataaaacgaatgtctgtgagtggagtcggagctgtggacacattggcttggaaaaatgttggagtggtagatggcttgacacttgacgtggaagatgatttaatttactggactgatgtttcttaccagaacatacagcgtgcaaacttagatggtagaaaccgacggccgatactacaaggcttagacaagcccagagcaatcgtcctttataaggctagaaggttgatgtattggaccgactggggagctacacctaagattgaacgctctgatttaggtggtggaagcaggagagttgtcgttcaaggagaattgaaatggccaaatggtttagttatcgacgaagcttctcaaaaactcttttgggccgacgctggtcttgacaagatagaaacctccaatctgttgggtcacggacgccgtgtactgctcagtgcccctcatgtgtatcacccttactccctcgccattttgaacaacagattgttctggagtgactgggaaacggccgggatacactcagtcgataaagagactggtaaagatgttgagacggtagccctaggccttgagcggccaacagggttcgcggtcttcaaggccacgcctccagttgatagtagtgtccgctgcccagaccccggcgacccgatatatggcaacaggcgcccgtctcccgaggaaggcgatgattacccacaaggcactgtgatactttacacgtgttttcctcagtacgacctgcatggtcccgtgacacgcacgtgtttgggtgatggtacctggagtgataaagctcctgaatgcctcactccttcgcgatttcgcgagactccaattaacgcatctgtcgcagaaggtgaaagcactattttgtcttgttctgcttcgactacggaaacaaagatctcgtggtttaaagatgggaaagtcgtcactggagacaactttgctacattgcggaatggaaatttactgatactccgcgcttaccacgaggataaaggctggtacgtctgtaacgcaacgaacagggcaggcactaaactggctcgcgcttatgtaaaggtggcgcgaccgctggacgcagattgcggcagaccaaccctgacgactcgcggcaaaatcgtcggtgggaagaaggttgaggcaggaacttggccttggatggcaagtttgtggaacaaaaagacaaacaaacacttctgtggtggatcacttgtgtccagcagatgggttgttaccgctgcccactgtctcccctcacctgatatagttcatgatatcgaggttcgtcttggtaaactgtacacagacaagatcttacacccagagcgcggcagagcacaatttattggcgctgaccgcattataatccatcctcaattctcggcggaccgttccgacttcgactcggatttggcgctgattcacctcagcagtgatgctgacatcgacgacaacgactacgtcaaaccaatctgccttcctctgcgtaaacgtgatgctgatgcaactcttttgaagactggaaacgagggggtcatcaccggctggggcggaaagaaagagtttggtaggacccttaagagaatgcaccaagtcactctacccatcgtggaccaaaacttgtgcaagaatgcgcacaaaaaatacgtcctgacgagtaaaatgttctgcgctggacatcacaatgggacacttggtgacgcctgccaaggagactcgggaggaccgctggccatcgaaaacagcggttcagcaagcgacgatgaccaacgctgggtgctggctggaatcgtttcctggggggatgggtgcggcagaattggaaaatatggcgtgtacacccgagtgtcagtttttgctcggtggataaatgatcagattaatgacgattaa

Transcript

evm.model.Ap11.92

ATGAAGAGCGGTACAAGCTTCGTTCTTATTTTCTTCTCTTCATGTATCGTCTTCACTTACGCTTTCGAGGACGACGTCCAAGTAATCAACAATGGTTTTGGCGACCTTCAATATGACACGTTGAATCCACTTCACTTTGCTAATAAACAGGAGACGGTTTCTGTTGTTAAACGTGATATCCCGAGTCACACAGAGACCCGAGTGCGACGTCAGGTATTAGTGGGAGGCGGAGGAACTAGGGTCGAGGACCTCACGGCCAGGCAAGACTGTGATGGGATTCTACTACAGTGGAATAGGCTCATGTTACCATTTAATCCAAAGAAACCTACAGCCAATGGAGAATTTAAACACTTTAACATTTACCGGAGCGATTCGTACTTTGACGATGTCTCGGTTATGAAGCCGTACGTTTCGGGCGAACGGGACACGTCCCTACAGAACCCGGGAACAGACAGCTACAAGGACTTGTACCCCCCGATTAATATGGAGCTTTACTATGCTGTAACAATTGTGGATGGAGAAGGGCAGGAGGGGAAAGCTGTGGACGCTAAAAAGATTGTGTTCGTGGGAGCAATGCAAAAGACAACACATTCCCCATTGTTTAAAATTGTTCCAGGATTCCTTAGTCGCATTGGAAAGGTTTTACATCACAGCACGGCGTGGAATCCAAATCGCAACGAGTATCTTGTCGCGTTTGATTTCGATGTTGATAATGATGGTCAACCCGACCAGCTCTTTGCCCTAAGGCTTGATACTCAGGGTTTAATAGTGGACAAACGAATGCTGAATTTCACTGCTAATATCAACAAGAAAGCAGGAAATCAAGGCTGGCCATCAGTAGCTTACAGCAGCATTGCTGATGAATACATGATCACTTTCCAGTTTCGCGCTGGTGTCACACAATACTTCAATAACAAATATATAATCATCAGCCAGAGAGTGATGAGCTCGCAGACCGAGAGGGCTGCTGGGCCTTCACTGCTAGTGAAGGCTCACGGGAAGGGAGGTCCTACACAATGGATCGACGCAAAGAATCCTCTTATCAAGTACAACAGCGTCACAGGTGGCTATGTCGGAGCTGTAATCGTGGAAGAATCTCGATCTCGCAAAGAAGTAGTTAGCTTGTTCGTTGACTCCAAAGGCAAAGTGCTTAAGACTGAGAATATCTGTAACTTCAAAGGAAGTGGCTTTGAGCCAAATATCTTCTTCGACTCGAAGAGAAACGAATTCTTCTTCGTGTGCACAGTGGAGAGTGGCGGCGTTGCCAATGCTGATTTCAACCTGAGGTCGGACGTTCATTCGGTGGTTCTTACCAAACGCGATGGGCATGGTGAGCATGCGTCTAACACAGAGAGCGCTGAGACAAAGAATTTTGTTGGATATACCAATAACACGCTTGCAAAGACAACTGGGTACTACAATGAGCTCACTGACAGATTGATCCTATTTTGGGAAGATAACGACCAAGGCAAGCCCTTCCTAGCAACAGCCTCTGTGTTACTGACTCGTCGACGTTACATCCGGAAAGTGCAACCGTACGGTTGCTTAGCAACGAAGCGAGTGAGAACGCCATCAGCGGTCTACTTTCCCTTAAATGGTAATCATTTCCTGTTGTGGCAAGAACAAGGTTCAGGAGCTTGGGTGATTGGGGGAGAGCTCCTACAAGGTAACATGCAACTTGCGTTTGGCAGACAGCAGAAGAACCCTGTCACACTTTACAACACCAAGATCCAAGGTGCATTCGTCACGTGGCAAGAAGAAGGCGTGCTATTGGCGCGCCAGGTTACCATAGCAACGCGACCCCTTTGCAGTCCGCTCTGCTCGTCACAGCAGAAATGCGCAGTGCAAGATAAATGTGTATCAAAGACGGGAGACTCTTGCACAATTAACAATGGTGGTTGCAGTCACGTGTGCACCTCATTGCGTCACTGGAAAGTACAATGTTCGTGCCCAGGCGACATGCAGCTTATGGGAGACGGGAAAACCTGTCAGAGCGTCCCTCCATGTCATGGCATGACTCCCGTGAAAAACCCGGCGACCGGAAGTGACTATTTCTGTGGAAGAGGAGCTCCAAGGAACGTCTGTCCTGCTAACACGTACTGTCATATTTCACCTGTTGATGCGTTTGCCAAATGTTGTCCAGCTCCTTTGCCTAGTTATTCTGTGATAGTCGCCGCCACATCGTCAATATGGCAGCTATTCATGGACACAAAACAAAACAGAGCCATTTTCCAAAAGCTACAGATAGACAATTCTGAAATGATTGTGGCGTTGGATTATAACCCAGTAGATAAGCGTGTATATTGGAGTGATACCACGGCTAATGCAATAAAACGAATGTCTGTGAGTGGAGTCGGAGCTGTGGACACATTGGCTTGGAAAAATGTTGGAGTGGTAGATGGCTTGACACTTGACGTGGAAGATGATTTAATTTACTGGACTGATGTTTCTTACCAGAACATACAGCGTGCAAACTTAGATGGTAGAAACCGACGGCCGATACTACAAGGCTTAGACAAGCCCAGAGCAATCGTCCTTTATAAGGCTAGAAGGTTGATGTATTGGACCGACTGGGGAGCTACACCTAAGATTGAACGCTCTGATTTAGGTGGTGGAAGCAGGAGAGTTGTCGTTCAAGGAGAATTGAAATGGCCAAATGGTTTAGTTATCGACGAAGCTTCTCAAAAACTCTTTTGGGCCGACGCTGGTCTTGACAAGATAGAAACCTCCAATCTGTTGGGTCACGGACGCCGTGTACTGCTCAGTGCCCCTCATGTGTATCACCCTTACTCCCTCGCCATTTTGAACAACAGATTGTTCTGGAGTGACTGGGAAACGGCCGGGATACACTCAGTCGATAAAGAGACTGGTAAAGATGTTGAGACGGTAGCCCTAGGCCTTGAGCGGCCAACAGGGTTCGCGGTCTTCAAGGCCACGCCTCCAGTTGATAGTAGTGTCCGCTGCCCAGACCCCGGCGACCCGATATATGGCAACAGGCGCCCGTCTCCCGAGGAAGGCGATGATTACCCACAAGGCACTGTGATACTTTACACGTGTTTTCCTCAGTACGACCTGCATGGTCCCGTGACACGCACGTGTTTGGGTGATGGTACCTGGAGTGATAAAGCTCCTGAATGCCTCACTCCTTCGCGATTTCGCGAGACTCCAATTAACGCATCTGTCGCAGAAGGTGAAAGCACTATTTTGTCTTGTTCTGCTTCGACTACGGAAACAAAGATCTCGTGGTTTAAAGATGGGAAAGTCGTCACTGGAGACAACTTTGCTACATTGCGGAATGGAAATTTACTGATACTCCGCGCTTACCACGAGGATAAAGGCTGGTACGTCTGTAACGCAACGAACAGGGCAGGCACTAAACTGGCTCGCGCTTATGTAAAGGTGGCGCGACCGCTGGACGCAGATTGCGGCAGACCAACCCTGACGACTCGCGGCAAAATCGTCGGTGGGAAGAAGGTTGAGGCAGGAACTTGGCCTTGGATGGCAAGTTTGTGGAACAAAAAGACAAACAAACACTTCTGTGGTGGATCACTTGTGTCCAGCAGATGGGTTGTTACCGCTGCCCACTGTCTCCCCTCACCTGATATAGTTCATGATATCGAGGTTCGTCTTGGTAAACTGTACACAGACAAGATCTTACACCCAGAGCGCGGCAGAGCACAATTTATTGGCGCTGACCGCATTATAATCCATCCTCAATTCTCGGCGGACCGTTCCGACTTCGACTCGGATTTGGCGCTGATTCACCTCAGCAGTGATGCTGACATCGACGACAACGACTACGTCAAACCAATCTGCCTTCCTCTGCGTAAACGTGATGCTGATGCAACTCTTTTGAAGACTGGAAACGAGGGGGTCATCACCGGCTGGGGCGGAAAGAAAGAGTTTGGTAGGACCCTTAAGAGAATGCACCAAGTCACTCTACCCATCGTGGACCAAAACTTGTGCAAGAATGCGCACAAAAAATACGTCCTGACGAGTAAAATGTTCTGCGCTGGACATCACAATGGGACACTTGGTGACGCCTGCCAAGGAGACTCGGGAGGACCGCTGGCCATCGAAAACAGCGGTTCAGCAAGCGACGATGACCAACGCTGGGTGCTGGCTGGAATCGTTTCCTGGGGGGATGGGTGCGGCAGAATTGGAAAATATGGCGTGTACACCCGAGTGTCAGTTTTTGCTCGGTGGATAAATGATCAGATTAATGACGATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P00735	Prothrombin OS=Bos taurus OX=9913 GN=F2 PE=1 SV=2
P00734	Prothrombin OS=Homo sapiens OX=9606 GN=F2 PE=1 SV=2
Q19AZ8	Prothrombin OS=Sus scrofa OX=9823 GN=F2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003298 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR050778 all species →	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR033116 all species →	Active_site	Serine proteases, trypsin family, serine active site	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR001314 all species →	Family	Peptidase S1A, chymotrypsin family	Interproscan
IPR018114 all species →	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513 all species →	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0017147 all species →	Molecular Function	Wnt-protein binding	Interproscan
GO:0042813 all species →	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap11.92.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.