Genomic Location: Ap11:10242591...10257892
NR annotation: KAJ7391999.1, Armadillo repeat-containing protein 8 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap11.927 |
| Transcript |
| evm.model.Ap11.927 |
| Protein |
| evm.model.Ap11.927 |
| UniProt accession | Description |
|---|---|
| Q05AL1 | Armadillo repeat-containing protein 8 OS=Danio rerio OX=7955 GN=armc8 PE=2 SV=1 |
| Q8IUR7 | Armadillo repeat-containing protein 8 OS=Homo sapiens OX=9606 GN=ARMC8 PE=1 SV=2 |
| Q2KI54 | Armadillo repeat-containing protein 8 OS=Bos taurus OX=9913 GN=ARMC8 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002851 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02985 all species → | HEAT | HEAT repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR000357 all species → | Repeat | HEAT repeat | Interproscan |
| IPR038739 all species → | Family | Armadillo-type fold containing protein ARMC8/Vid28 | Interproscan |
| IPR000225 all species → | Repeat | Armadillo | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15651 all species → | ARMADILLO REPEAT-CONTAINING PROTEIN 8 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0034657 all species → | Cellular Component | GID complex | Interproscan |
| GO:0043161 all species → | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
evm.model.Ap11.927.Transcript abundance of evm.model.Ap11.927 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
