Genomic Location: Ap12:10856262...10870446
NR annotation: XP_020604453.1, helicase with zinc finger domain 2-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families
| CDS |
| evm.model.Ap12.1003 |
| Transcript |
| evm.model.Ap12.1003 |
| Protein |
| evm.model.Ap12.1003 |
| UniProt accession | Description |
|---|---|
| Q9BYK8 | 3'-5' exoribonuclease HELZ2 OS=Homo sapiens OX=9606 GN=HELZ2 PE=1 SV=7 |
| E9QAM5 | 3'-5' exoribonuclease HELZ2 OS=Mus musculus OX=10090 GN=Helz2 PE=1 SV=1 |
| Q9FJR0 | Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana OX=3702 GN=UPF1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000671 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13087 all species → | AAA_12 | AAA domain | Domain | Interproscan |
| PF13086 all species → | AAA_11 | AAA domain | Domain | Interproscan |
| PF00773 all species → | RNB | RNB domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR041679 all species → | Domain | DNA2/NAM7 helicase-like, C-terminal | Interproscan |
| IPR047187 all species → | Domain | Upf1-like, C-terminal helicase domain | Interproscan |
| IPR039691 all species → | Family | Zinc finger CCCH domain-containing protein A/B | Interproscan |
| IPR041677 all species → | Domain | DNA2/NAM7 helicase, helicase domain | Interproscan |
| IPR022966 all species → | Conserved_site | Ribonuclease II/R, conserved site | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR001900 all species → | Domain | Ribonuclease II/R | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14928 all species → | MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0035196 all species → | Biological Process | miRNA processing | Interproscan |
| GO:0035198 all species → | Molecular Function | miRNA binding | Interproscan |
| GO:0004386 all species → | Molecular Function | helicase activity | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0004540 all species → | Molecular Function | RNA nuclease activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K25165 | HELZ2; 3'-5' exoribonuclease HELZ2 | EC:3.1.13.1 EC:5.6.2.6 | Messenger RNA biogenesis | ko03019 | deepkoala |