Gene detail

Detailed information of evm.model.Ap12.1028 in Astrangia poculata

Genomic Location: Ap12:11165686...11175822
NR annotation: XP_020607413.1, uncharacterized protein LOC110046083 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.1028

atggagggttcttcacaagaacgagaaatggaagttgaagcgctgcaatcaatctacggagaacaatttgctgtgatggcagcgaatggagacgatccacctgtgtatgaagtcaaacttcaaccaagtaaaacaaagataattttcacaataccagaaaaatacccagatgttcctccttccattagctgtgtcacagaagacaaccaacctgtttatacagaacttgaatcactgctgtacaacagtgcacacgaatgccgtggggaagtaatgatttacaatcttatagaagaagctaaagactggataaagaaatatgaactcactgaacaaattccttctactcaagaagaggagaagtcatctgaggacatggccaccatttgtaagttctttctggaggggaaatgcagatttggaaacaagtgtttcaataaacatgaggaaacaacaagctctaaaagtagtgcagaagatggatcattgcactcaaaactgtctggtgaagaaactgaaaaattgtccacaaaagctaaagaacagccaaatgttcaatcaaagtctgtgaagaactcgggaagcagacattctgaaaagaaagagaatgaaggctccaaaaagaaacctccgatgaaaacggcaagtgatgtgatatccagaattcaatgggacgaggagctgtcaccaaaggactttgttgttggttacttggatcgctttattggaattatggaaaaatgtttcacagatttgtcatgggaggaccttgcttctgtcgatcactttgttgaccttgccttgcctcgacacagaattcagtacttcaagtacctgggagaaatagtgtgggacaaaagggaacgtattgacaaggtttttggttctacaggcagccaggagaccattttagatgtgaaagagagaattggtgtccagccaggctctaatgaagaatctaccacagtgactgatgatgtaagttctgttgcttctgaactccccacacttgtgaaggaaaagaatggcccaaattatttcattgctgtgcagattgcagatgaggggataattgacagcatcactaagattcaaaataccatcgaagttgaacttggccatgaaggagaatatgagctgacaccaagacaaaggctacacattaccctgcttatgttgactctacacaccgaggatcatgtagccactgccaagagtatcctcaagtcagtccaacccttgttggtgtccttccttccacgcagccacaaactgcgacttagtggtcttggacagtttcacaacaggattgtgtatgccaaagtcgaacctgatgcagggctgtgcaaacttgtccaggctctaaaatataagtttgccaaagctgggataagtttagaaggaaacagagatgtatttgtgcctcatcttaccattatgagaggcacgtcaagggatttactaagtgctggtcatgtccaggaaaagttggctgatttgatgaaagctgaccatgaaattggggaacaatgtgtagagtctcttgttcttttctccaagtttctgccaaaagacattgatggaactcaccacaaggtttcaacagtggaaaattccttgaaatcactgtcttctaccctgccaagaaaactgtgtcaatacgtggatcatttgtttgaatgtgaggaactttgcgaagatgaaaggaatgacattcaagcactgttccagtctggagatgctgctaagcttgacacggggcttgcaagattggcacaactcagtaacgccactcaagatagaatggttctgataatgagaggtattccaggaagcggaaaaacccatcttgtcgagaactcagtggaagccaaaggtcagagtggatcttacacatactgcagcgccaggcagctttttcacaagacaggtgcttccgccccagatccctctgaactgaatattgccgaggcgtactgccgctcgtgtttcctggacgccatggcaaatttatgtccctttgttgttgtcgatggcgtccataccaagtgttgggagtacgctgtgtacaagtgtctcgcccgagcatttggttatgccttccacgtgcttgaggttcgaacaacacagcctgaggacatcaagttatgccatcaaaactgcacctctggaatacagttggaacagctacttgaagatgtgcaagactgggaagatgattctgcagccactgtaatagaaccctggttcaacaagccagactcattaaaatacactgagtcagtgtccctaaaacaaatgctgaacactgctgtctgtacacaatga

Transcript

evm.model.Ap12.1028

ATGGAGGGTTCTTCACAAGAACGAGAAATGGAAGTTGAAGCGCTGCAATCAATCTACGGAGAACAATTTGCTGTGATGGCAGCGAATGGAGACGATCCACCTGTGTATGAAGTCAAACTTCAACCAAGTAAAACAAAGATAATTTTCACAATACCAGAAAAATACCCAGATGTTCCTCCTTCCATTAGCTGTGTCACAGAAGACAACCAACCTGTTTATACAGAACTTGAATCACTGCTGTACAACAGTGCACACGAATGCCGTGGGGAAGTAATGATTTACAATCTTATAGAAGAAGCTAAAGACTGGATAAAGAAATATGAACTCACTGAACAAATTCCTTCTACTCAAGAAGAGGAGAAGTCATCTGAGGACATGGCCACCATTTGTAAGTTCTTTCTGGAGGGGAAATGCAGATTTGGAAACAAGTGTTTCAATAAACATGAGGAAACAACAAGCTCTAAAAGTAGTGCAGAAGATGGATCATTGCACTCAAAACTGTCTGGTGAAGAAACTGAAAAATTGTCCACAAAAGCTAAAGAACAGCCAAATGTTCAATCAAAGTCTGTGAAGAACTCGGGAAGCAGACATTCTGAAAAGAAAGAGAATGAAGGCTCCAAAAAGAAACCTCCGATGAAAACGGCAAGTGATGTGATATCCAGAATTCAATGGGACGAGGAGCTGTCACCAAAGGACTTTGTTGTTGGTTACTTGGATCGCTTTATTGGAATTATGGAAAAATGTTTCACAGATTTGTCATGGGAGGACCTTGCTTCTGTCGATCACTTTGTTGACCTTGCCTTGCCTCGACACAGAATTCAGTACTTCAAGTACCTGGGAGAAATAGTGTGGGACAAAAGGGAACGTATTGACAAGGTTTTTGGTTCTACAGGCAGCCAGGAGACCATTTTAGATGTGAAAGAGAGAATTGGTGTCCAGCCAGGCTCTAATGAAGAATCTACCACAGTGACTGATGATGTAAGTTCTGTTGCTTCTGAACTCCCCACACTTGTGAAGGAAAAGAATGGCCCAAATTATTTCATTGCTGTGCAGATTGCAGATGAGGGGATAATTGACAGCATCACTAAGATTCAAAATACCATCGAAGTTGAACTTGGCCATGAAGGAGAATATGAGCTGACACCAAGACAAAGGCTACACATTACCCTGCTTATGTTGACTCTACACACCGAGGATCATGTAGCCACTGCCAAGAGTATCCTCAAGTCAGTCCAACCCTTGTTGGTGTCCTTCCTTCCACGCAGCCACAAACTGCGACTTAGTGGTCTTGGACAGTTTCACAACAGGATTGTGTATGCCAAAGTCGAACCTGATGCAGGGCTGTGCAAACTTGTCCAGGCTCTAAAATATAAGTTTGCCAAAGCTGGGATAAGTTTAGAAGGAAACAGAGATGTATTTGTGCCTCATCTTACCATTATGAGAGGCACGTCAAGGGATTTACTAAGTGCTGGTCATGTCCAGGAAAAGTTGGCTGATTTGATGAAAGCTGACCATGAAATTGGGGAACAATGTGTAGAGTCTCTTGTTCTTTTCTCCAAGTTTCTGCCAAAAGACATTGATGGAACTCACCACAAGGTTTCAACAGTGGAAAATTCCTTGAAATCACTGTCTTCTACCCTGCCAAGAAAACTGTGTCAATACGTGGATCATTTGTTTGAATGTGAGGAACTTTGCGAAGATGAAAGGAATGACATTCAAGCACTGTTCCAGTCTGGAGATGCTGCTAAGCTTGACACGGGGCTTGCAAGATTGGCACAACTCAGTAACGCCACTCAAGATAGAATGGTTCTGATAATGAGAGGTATTCCAGGAAGCGGAAAAACCCATCTTGTCGAGAACTCAGTGGAAGCCAAAGGTCAGAGTGGATCTTACACATACTGCAGCGCCAGGCAGCTTTTTCACAAGACAGGTGCTTCCGCCCCAGATCCCTCTGAACTGAATATTGCCGAGGCGTACTGCCGCTCGTGTTTCCTGGACGCCATGGCAAATTTATGTCCCTTTGTTGTTGTCGATGGCGTCCATACCAAGTGTTGGGAGTACGCTGTGTACAAGTGTCTCGCCCGAGCATTTGGTTATGCCTTCCACGTGCTTGAGGTTCGAACAACACAGCCTGAGGACATCAAGTTATGCCATCAAAACTGCACCTCTGGAATACAGTTGGAACAGCTACTTGAAGATGTGCAAGACTGGGAAGATGATTCTGCAGCCACTGTAATAGAACCCTGGTTCAACAAGCCAGACTCATTAAAATACACTGAGTCAGTGTCCCTAAAACAAATGCTGAACACTGCTGTCTGTACACAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BTN6	Leukocyte receptor cluster member 9 OS=Mus musculus OX=10090 GN=Leng9 PE=2 SV=1
Q96B70	Leukocyte receptor cluster member 9 OS=Homo sapiens OX=9606 GN=LENG9 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006798 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10469 all species →	AKAP7_NLS	AKAP7 2'5' RNA ligase-like domain	Domain	Interproscan
PF05773 all species →	RWD	RWD domain	Domain	Interproscan
PF04457 all species →	MJ1316	MJ1316 RNA cyclic group end recognition domain	Domain	Interproscan
PF18044 all species →	zf-CCCH_4	CCCH-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006575 all species →	Domain	RWD domain	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR042653 all species →	Family	Leukocyte receptor cluster member 9	Interproscan
IPR019510 all species →	Domain	A-kinase anchor protein 7-like, phosphoesterase domain	Interproscan
IPR040459 all species →	Domain	MJ1316 RNA cyclic group end recognition domain	Interproscan
IPR041367 all species →	Domain	E3 ligase, CCCH-type zinc finger	Interproscan
IPR009097 all species →	Homologous_superfamily	Cyclic phosphodiesterase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46729 all species →	LEUKOCYTE RECEPTOR CLUSTER MEMBER 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.1028.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.