Gene detail

Detailed information of evm.model.Ap12.1041 in Astrangia poculata

Genomic Location: Ap12:11266697...11290639
NR annotation: CAH3105694.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.1041

atgtttcagcgtcagaagaactggatatctgacgtactgtggaaaccgaaaaaggctcattctcttgagcaattaaggtatctgcattatgtccttactaagaattcgaccgtgaatgagactaacaggggattacttgtcgaaacgttgcgttccattgcggagattctcatctggggagatcaaaatgacagcagagtattcgatttctttctggagaagagcatgttgatgtactttttaaagatgatgagtcagaagtccaatcagatttgtgttcagctgctacagactctgagcattctgtttgaaaacatcaggaatgagacttcattatattatttgctatcaaataacagtgtcaattccattattattcataagtttgacttttctgatgaagaggtattggcatactacatttcatttctgaagacattatctcttaagctaaacaaccatacagtgcactttttcttcaacgagcacaagaatgatttccccttatacactgaagccatcaaattcttcaaccattctgagagtatggttagaatagcagtcaggactctaaccttgaatgtctatagagttggagataagaacatgcttaattttattcgtgacaagacagcagatccatacttttggaacctggtgtggtttattggcaatcatgccattgaactcgataactgcgtcctcaaagagtctcaccacctgaagtgtgacaggctgaaggacttggttgcagaacatttagatcatctacactaccttcatgacatcctatcactcaacatcaaagatgtgaatgtagtgttaactggacatttcatcaaccgtctattaattcctttgtacatttactccctggtacacaaaagacctgatatggaacaggaaactcctcgacttggtgtgatggttgcccttttccttctttctcaaatacttttgatcatgtctcatcccccactggtctctagcctggttgatgtgcttgttaatggtgatgaggttgcctcagggggcacccctgaagattctcctttacctcttagaaaggcatgttcccttagcggttcagctgcaagtgttagaacttttcaaagacctgaagaaacgttagaagagtctctagttgcccgtggagtgaatacagaggggtactctttccttggaaggacgtcgtctttggggcctctgtccagaggacgatcactgcatgtggcaaactccaagttttatgttaaagacaacaacaggaaagagggtgatgagatagagcttattcctagcaaagaaagaacaagtgctgggaagagaagtactcctaaaaaagatgctgacttgagtcctgtccaggttcctctcattcagactccacttggacagaatgatagcgagtctgacacagactcgtcttctggattttccactcctgttgccacgtctggtgaaagtaccaaggaagaaactacaacggaaaaacgtccaacaaacattcaaactacagtgccggttgaaaaagacctaactgaagagataaagagcgttattcaaagacccaaagaattccaccgtgacagtatgtttctcgaagcaatccatgagagtctagactgtagcaataatgacgaagaggcgctgtttgcgatctgcctgctgtgtgcagccattagaaacaatggtgtggataaaaacttactcgaatcaataggactttcctcagctaagaggaaagtcccgtacaacgagaaattagtagaaaaccttattagagtgctggagcttggttatcgaaatgggagtcaagtgcgcgtggtaacactggaaatgttaattttactgttcaaggagctgatcatgtacacagaggataacactagatgtagctaccttgatgacagacacctagcactcatcgagaacgtacgcgaggccagcacgttgcagttaaggcattattacaaggaagatgaaatttttttggacatgtttgaagatgagtaccgacaaacaaaggtgaagccgccaaacttgcaacatttgatgatggatgccacgctgctccttccactcacgggtacaccgctgaccggaattgagttttacaagcgtctgccgtgtggagaagtggagcacacacgaagggcgattcgtgtgtttctgctgatgagagacctttgtctggcattgctggggcagaccgaacaacaactgcctctatcaaaagtagaaaactctgtccatttggaagacgtcctggatctaaataacagtgacttgatagcttgcacagtgaagacagaagacaaacagcagcgccgtttccttgtcatagacgaagctcagtttatactcgtggaaccagacacaaccaagttaggttggggcgtggtcaagtttgtcgcaaggcttcaggatgtggagacggcccctgataaggaagacagtcgctcactattcatcaccatccaccagcccagctcagtacgaagcctgaccaaggttcgctaccggcctatcctgtctgctaaattcatatttgatgattatatccgctgcatgtctgctaagcagcgcctgcagaggcggcgtacaatgctcagacaacataaactacactgcatagcacagctgttagagctgccagccatggcctctcctccgtcccattattactctattaccccgccggcttacgtgaatctgggcccaggacagcttgagtcaccaacagactctcaaacaactgagcccgcggacgaagggtttgatcggcaagcgcagcttcaagcgcacgcgcaatcatctagtgatacgtcacaggattctgtccaggcctcgctcgcagcagccatggccacacctgagcagtgtttgtctccgattcatgcgcaggggcgacgcacgacttcgcaagctgaggcgctagctagcgtactagaacagtcacctccggctaacagcacgaccaaacaacggactacgtcggtagaagaagcgacggaagccatagagatggaacttaccaactctttagttcaatctgccaaaggaaatgattccactggcgagtccactcctgtagaacgccggtcccgatcacattccatggaaaatcttccgcattcaactgccaggagaaatcccgtatcgctctcagcccctgccacaccccgtggggacaggcgttcatgtccggctattaaactcgatgacgtagacagtttagtaaagtcgaacactcagaactccatgtctgagcctgcaatatttttctctggtcagtgggattcccctcccgcgccagctaataaacctgtggagagaaaaccgaaaaagactgggaacaaaaaaggcgcgcagcgcggcaagggaaggcaacgaaagagataa

Transcript

evm.model.Ap12.1041

CAGATAGTGAGTGGTGTGTCCTGCCTTTTTGTTGACAGTTTACGCTTCGCCAGCAAGCTGGACGGCGAAATGTTTCAGCGTCAGAAGAACTGGATATCTGACGTACTGTGGAAACCGAAAAAGGCTCATTCTCTTGAGCAATTAAGGTATCTGCATTATGTCCTTACTAAGAATTCGACCGTGAATGAGACTAACAGGGGATTACTTGTCGAAACGTTGCGTTCCATTGCGGAGATTCTCATCTGGGGAGATCAAAATGACAGCAGAGTATTCGATTTCTTTCTGGAGAAGAGCATGTTGATGTACTTTTTAAAGATGATGAGTCAGAAGTCCAATCAGATTTGTGTTCAGCTGCTACAGACTCTGAGCATTCTGTTTGAAAACATCAGGAATGAGACTTCATTATATTATTTGCTATCAAATAACAGTGTCAATTCCATTATTATTCATAAGTTTGACTTTTCTGATGAAGAGGTATTGGCATACTACATTTCATTTCTGAAGACATTATCTCTTAAGCTAAACAACCATACAGTGCACTTTTTCTTCAACGAGCACAAGAATGATTTCCCCTTATACACTGAAGCCATCAAATTCTTCAACCATTCTGAGAGTATGGTTAGAATAGCAGTCAGGACTCTAACCTTGAATGTCTATAGAGTTGGAGATAAGAACATGCTTAATTTTATTCGTGACAAGACAGCAGATCCATACTTTTGGAACCTGGTGTGGTTTATTGGCAATCATGCCATTGAACTCGATAACTGCGTCCTCAAAGAGTCTCACCACCTGAAGTGTGACAGGCTGAAGGACTTGGTTGCAGAACATTTAGATCATCTACACTACCTTCATGACATCCTATCACTCAACATCAAAGATGTGAATGTAGTGTTAACTGGACATTTCATCAACCGTCTATTAATTCCTTTGTACATTTACTCCCTGGTACACAAAAGACCTGATATGGAACAGGAAACTCCTCGACTTGGTGTGATGGTTGCCCTTTTCCTTCTTTCTCAAATACTTTTGATCATGTCTCATCCCCCACTGGTCTCTAGCCTGGTTGATGTGCTTGTTAATGGTGATGAGGTTGCCTCAGGGGGCACCCCTGAAGATTCTCCTTTACCTCTTAGAAAGGCATGTTCCCTTAGCGGTTCAGCTGCAAGTGTTAGAACTTTTCAAAGACCTGAAGAAACGTTAGAAGAGTCTCTAGTTGCCCGTGGAGTGAATACAGAGGGGTACTCTTTCCTTGGAAGGACGTCGTCTTTGGGGCCTCTGTCCAGAGGACGATCACTGCATGTGGCAAACTCCAAGTTTTATGTTAAAGACAACAACAGGAAAGAGGGTGATGAGATAGAGCTTATTCCTAGCAAAGAAAGAACAAGTGCTGGGAAGAGAAGTACTCCTAAAAAAGATGCTGACTTGAGTCCTGTCCAGGTTCCTCTCATTCAGACTCCACTTGGACAGAATGATAGCGAGTCTGACACAGACTCGTCTTCTGGATTTTCCACTCCTGTTGCCACGTCTGGTGAAAGTACCAAGGAAGAAACTACAACGGAAAAACGTCCAACAAACATTCAAACTACAGTGCCGGTTGAAAAAGACCTAACTGAAGAGATAAAGAGCGTTATTCAAAGACCCAAAGAATTCCACCGTGACAGTATGTTTCTCGAAGCAATCCATGAGAGTCTAGACTGTAGCAATAATGACGAAGAGGCGCTGTTTGCGATCTGCCTGCTGTGTGCAGCCATTAGAAACAATGGTGTGGATAAAAACTTACTCGAATCAATAGGACTTTCCTCAGCTAAGAGGAAAGTCCCGTACAACGAGAAATTAGTAGAAAACCTTATTAGAGTGCTGGAGCTTGGTTATCGAAATGGGAGTCAAGTGCGCGTGGTAACACTGGAAATGTTAATTTTACTGTTCAAGGAGCTGATCATGTACACAGAGGATAACACTAGATGTAGCTACCTTGATGACAGACACCTAGCACTCATCGAGAACGTACGCGAGGCCAGCACGTTGCAGTTAAGGCATTATTACAAGGAAGATGAAATTTTTTTGGACATGTTTGAAGATGAGTACCGACAAACAAAGGTGAAGCCGCCAAACTTGCAACATTTGATGATGGATGCCACGCTGCTCCTTCCACTCACGGGTACACCGCTGACCGGAATTGAGTTTTACAAGCGTCTGCCGTGTGGAGAAGTGGAGCACACACGAAGGGCGATTCGTGTGTTTCTGCTGATGAGAGACCTTTGTCTGGCATTGCTGGGGCAGACCGAACAACAACTGCCTCTATCAAAAGTAGAAAACTCTGTCCATTTGGAAGACGTCCTGGATCTAAATAACAGTGACTTGATAGCTTGCACAGTGAAGACAGAAGACAAACAGCAGCGCCGTTTCCTTGTCATAGACGAAGCTCAGTTTATACTCGTGGAACCAGACACAACCAAGTTAGGTTGGGGCGTGGTCAAGTTTGTCGCAAGGCTTCAGGATGTGGAGACGGCCCCTGATAAGGAAGACAGTCGCTCACTATTCATCACCATCCACCAGCCCAGCTCAGTACGAAGCCTGACCAAGGTTCGCTACCGGCCTATCCTGTCTGCTAAATTCATATTTGATGATTATATCCGCTGCATGTCTGCTAAGCAGCGCCTGCAGAGGCGGCGTACAATGCTCAGACAACATAAACTACACTGCATAGCACAGCTGTTAGAGCTGCCAGCCATGGCCTCTCCTCCGTCCCATTATTACTCTATTACCCCGCCGGCTTACGTGAATCTGGGCCCAGGACAGCTTGAGTCACCAACAGACTCTCAAACAACTGAGCCCGCGGACGAAGGGTTTGATCGGCAAGCGCAGCTTCAAGCGCACGCGCAATCATCTAGTGATACGTCACAGGATTCTGTCCAGGCCTCGCTCGCAGCAGCCATGGCCACACCTGAGCAGTGTTTGTCTCCGATTCATGCGCAGGGGCGACGCACGACTTCGCAAGCTGAGGCGCTAGCTAGCGTACTAGAACAGTCACCTCCGGCTAACAGCACGACCAAACAACGGACTACGTCGGTAGAAGAAGCGACGGAAGCCATAGAGATGGAACTTACCAACTCTTTAGTTCAATCTGCCAAAGGAAATGATTCCACTGGCGAGTCCACTCCTGTAGAACGCCGGTCCCGATCACATTCCATGGAAAATCTTCCGCATTCAACTGCCAGGAGAAATCCCGTATCGCTCTCAGCCCCTGCCACACCCCGTGGGGACAGGCGTTCATGTCCGGCTATTAAACTCGATGACGTAGACAGTTTAGTAAAGTCGAACACTCAGAACTCCATGTCTGAGCCTGCAATATTTTTCTCTGGTCAGTGGGATTCCCCTCCCGCGCCAGCTAATAAACCTGTGGAGAGAAAACCGAAAAAGACTGGGAACAAAAAAGGCGCGCAGCGCGGCAAGGGAAGGCAACGAAAGAGATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80U30	Protein CLEC16A OS=Mus musculus OX=10090 GN=Clec16a PE=1 SV=2
Q2KHT3	Protein CLEC16A OS=Homo sapiens OX=9606 GN=CLEC16A PE=1 SV=2
Q9VEV4	Protein CLEC16A homolog OS=Drosophila melanogaster OX=7227 GN=ema PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003789 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19439 all species →	CLEC16A_C	CLEC16A C-terminal	Domain	Interproscan
PF09758 all species →	FPL	Uncharacterised conserved protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039272 all species →	Family	CLEC16A/TT9	Interproscan
IPR045820 all species →	Domain	CLEC16A/TT9, C-terminal	Interproscan
IPR019155 all species →	Domain	CLEC16A/TT9, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21481 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005770 all species →	Cellular Component	late endosome	Interproscan
GO:0008333 all species →	Biological Process	endosome to lysosome transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0036020 all species →	Cellular Component	endolysosome membrane	Interproscan
GO:1901096 all species →	Biological Process	regulation of autophagosome maturation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19513	CLEC16A; protein CLEC16A	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.