Detailed information of evm.model.Ap12.1046 in Astrangia poculata

Genomic Location: Ap12:11326388...11348386
NR annotation: XP_020607381.1, eukaryotic translation initiation factor 3 subunit B-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A7MB16Eukaryotic translation initiation factor 3 subunit B OS=Bos taurus OX=9913 GN=EIF3B PE=2 SV=1
Q4G061Eukaryotic translation initiation factor 3 subunit B OS=Rattus norvegicus OX=10116 GN=Eif3b PE=1 SV=1
Q8JZQ9Eukaryotic translation initiation factor 3 subunit B OS=Mus musculus OX=10090 GN=Eif3b PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006577 (this species only)
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08662
all species →		eIF2AEukaryotic translation initiation factor eIF2ARepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011400
all species →		FamilyEukaryotic translation initiation factor 3 subunit BInterproscan
IPR013979
all species →		DomainTranslation initiation factor, beta propellor-like domainInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14068
all species →		EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0003743
all species →		Molecular Functiontranslation initiation factor activityInterproscan
GO:0005852
all species →		Cellular Componenteukaryotic translation initiation factor 3 complexInterproscan
GO:0006413
all species →		Biological Processtranslational initiationInterproscan
GO:0031369
all species →		Molecular Functiontranslation initiation factor bindingInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.1046.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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