Detailed information of evm.model.Ap12.1051 in Astrangia poculata

Genomic Location: Ap12:11412507...11420555
NR annotation: XP_020609974.1, protein piccolo-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q61818Retinoic acid-induced protein 1 OS=Mus musculus OX=10090 GN=Rai1 PE=1 SV=3
Q7Z5J4Retinoic acid-induced protein 1 OS=Homo sapiens OX=9606 GN=RAI1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007215 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13771
all species →		zf-HC5HC2HPHD-like zinc-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052440
all species →		FamilyTranscriptional Regulator and Chromatin RemodelerInterproscan
IPR001965
all species →		DomainZinc finger, PHD-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR034732
all species →		DomainExtended PHD (ePHD) domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14955
all species →		RETINOIC ACID INDUCED 1/TRANSCRIPTION FACTOR 20Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.1051.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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