Detailed information of evm.model.Ap12.1099 in Astrangia poculata

Genomic Location: Ap12:11892416...11899569
NR annotation: XP_020621253.1, LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 5-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8K448Cholesterol transporter ABCA5 OS=Mus musculus OX=10090 GN=Abca5 PE=1 SV=2
Q8WWZ7Cholesterol transporter ABCA5 OS=Homo sapiens OX=9606 GN=ABCA5 PE=1 SV=2
Q8CF82Cholesterol transporter ABCA5 OS=Rattus norvegicus OX=10116 GN=Abca5 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000297 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12698
all species →		ABC2_membrane_3ABC-2 family transporter proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013525
all species →		DomainABC-2 type transporter, transmembrane domainInterproscan
IPR026082
all species →		FamilyABC transporter AInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19229
all species →		ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0140359
all species →		Molecular FunctionABC-type transporter activityInterproscan
GO:0005319
all species →		Molecular Functionlipid transporter activityInterproscan
GO:0006869
all species →		Biological Processlipid transportInterproscan
GO:0042626
all species →		Molecular FunctionATPase-coupled transmembrane transporter activityInterproscan
GO:0043231
all species →		Cellular Componentintracellular membrane-bounded organelleInterproscan
GO:0055085
all species →		Biological Processtransmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.1099.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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