Gene detail

Detailed information of evm.model.Ap12.1100 in Astrangia poculata

Genomic Location: Ap12:11901353...11922089
NR annotation: XP_020621253.1, LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 5-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.1100

atggatatttacgaagggcatgtgacggcattgctgggtcacaatggagcaggcaagacaactctgatatctatgatgacaggaatggtttctgctactgaggggagtgctactgtgtatggaatggacatcactgatcctattcagatgcaggaaataagaaaagttattggtgtgtgccaacaacagaatgtgctgttcaactttatgaccgtgagggaacatttagagttctatgctgggttgaaggaagtagccatagaggaacgggaggaagtggtgagttccctgatgaaagagattgacctggctgaccaaaaggacacattgtcaaaagatttgagcggaggccagaagagaaaactttgtgtgggcatggcacttattggagacccaaaggtggtaattttagatgaacccactagcggaatggacccatattctcggcggctcttgtggtccttgttaaaggaaaagtgcaaaaacagagtggtcctccttacaacgcattttatggatgaagccgacattttagctgattacaaagctattttatccaaaggaaaagtgcgctgtgcaggaagttcactttttctcaagaatcgctttggaattggatatcatttgaacatggctttagcagatgattgtgacacagagcggttgactgagcttgttcaaagcaaagtgcaaggtgctcaggctatacgtcaccacggaaaagaaatggcgttcgctctgcccatggagcaagtatcgtattttccagatttactcaaagctctggaagataacaatgacagttctgaggtctgtgcagcccctttactcggcgtgaccagctatggtgttgccatgacaacactcgaagaggtttttctccaactggaagacacaagcgaggtagagagtgagtcgtcatcagatgacttggaacctcagatggataagagttctcaaaatctgctagcacctacggatgccatcaacattgaagatggaggctcgaaatactcagggtctgtcaatgcattacacaaggctggagtggagctaaataatccagaactgaaaggcaattcacagaaaccggtgtggaaggcaaaacagcagctcttagcattactgaagattcgctggttaatgtcaattcgtaccccagccaaaatatttttccagattatcgttcccccatgtctgttaatcgctggcctttcgatattacgcgctaacaaggacagcacgaagacagcagcccggccagaaccccttcatttgacgcctgatttgtacttgaaacctggtagcgatgaggattatgcgacaaatgcccttctgcagaactctaccaatcgagccatggactacgtaatggattacttgactgagtatggtgtcggcaccacgctggtgtcttctttaaatgatgtgttgagcagttcatctcgagcattacaaaccttgggatttaacattcgagagtttccagcggccttcaatttgtcacagcccagtgatctttcttcaagctttgagatgcgatacaacgacacaacagtgcattctgtacctcttggtgtcaacatcctaggatctattctgcacatgaacgcactcaagagccagaataaaactccttatccactggagaccacaatccttccatttcctggtcttaaaccggagtggacttttgactccacagcgtacacctcaatccttttgcttggcttagctctcattgttattcctggtggctttggcattttggttgtaggagaacgccaggagaagattcgccacttactgagggtgtctggagtgtcatcgtttgtctattggctggagatcttcctcgctgatgccatcgtcttcctcattccaatggtgctaatgctaatactagtgccagccttccagctgccctcgctgtctcctccgcccgccatgggctgcctggtgttggctttgtttctttacctgccctcgggaatactgttctcgtaccttctctcgttcctgttcagttcgtgggaggtagctcagcaagttctgccaatggcattcacttttgtggctatgatcccatttatggcggtgtcgctagtggacatgatagcaagccgtgatacagctattattcttcactatgtgtttgtatttctgttgcctccatatccagtctttggagctttgtattatatcgacagtatatacaggtaccagtctgctatagcgtttttcacagccaatggtaactcagtagatgttcaagtcactgcaagtcactacttcacatggactaaatacaatggcattcccgccgcattgattgctcctgttgttcattcaatcctgtttgctgtgctgatttacattctggaccaacgaaatgtcgccggtacagccacgtgtacttgtatacgcagtagcaaaaataacattcaagctgtccgaagttcaagccttgggcgaacggacagcgttcggtcaccagaacccggggacgaagacgtgagaagagagaaagaaaaactattaagcagaaatgaaacttctatcgaagagccctcttactccgttataatcaaggggctgtggaagagattcggctcaggcaagacggccaaaacagttgtcaaagacctgttttttggtgttgagcgaggagaagttttcggacttctcgggccaaacggcgccggcaagacaacctctctgaacatggtaacaggggacctgccaccgacaagaggaaaggtctatgtggcgggttatgacatgagcagacagccacatgaggcattccagcacatgggattttgcccacaggcagatgcactctggaacattgtgacactgcaggaacacctggaggcttttgctaggatccgcggtgtgccgtggggagaagtccaacggcttgtagagcactatatgtcagctttgaggattacagaacatgccaagaaaaggtccaaagatctttcaggaggaacgaaaagaaaggttagttttgccatggcaatgctcggggatcctgagctgctgttgcttgatgagccctctactggcatggacccttctgccagacgtttcttatggaacactatcagtaagaatgtgcatggaaaccggggggccattctcaccactcactccatggaggaggcagacgccttgtgctctcgagttggtatcatggtcaaaggtcaactcaaatgtcttggctcaacgcaacatttaaagagcacttacggcagtggttataccttggaaatcaaactcacacagacccagacccctgaatcctccacggaagattcgatggagcggctgcacagttatgttgttgagttgcttccaggtgccactcgctccgaaatgttcggcggaagagttatatacaaggtcccaagagaaggcgttggagcgctgtcagtaatctttaacaaactagaaagaggtaaggaagagattgggattgaggagtacagcttcagtcagtcgacccttgaacaggtttttctggagttcgcacgcgaacaagatgacgatcgaaccggagctaaagacaacccagatgacgtcatggaaaatggcggcgatcacgtgtcagtctag

Transcript

evm.model.Ap12.1100

ATGGATATTTACGAAGGGCATGTGACGGCATTGCTGGGTCACAATGGAGCAGGCAAGACAACTCTGATATCTATGATGACAGGAATGGTTTCTGCTACTGAGGGGAGTGCTACTGTGTATGGAATGGACATCACTGATCCTATTCAGATGCAGGAAATAAGAAAAGTTATTGGTGTGTGCCAACAACAGAATGTGCTGTTCAACTTTATGACCGTGAGGGAACATTTAGAGTTCTATGCTGGGTTGAAGGAAGTAGCCATAGAGGAACGGGAGGAAGTGGTGAGTTCCCTGATGAAAGAGATTGACCTGGCTGACCAAAAGGACACATTGTCAAAAGATTTGAGCGGAGGCCAGAAGAGAAAACTTTGTGTGGGCATGGCACTTATTGGAGACCCAAAGGTGGTAATTTTAGATGAACCCACTAGCGGAATGGACCCATATTCTCGGCGGCTCTTGTGGTCCTTGTTAAAGGAAAAGTGCAAAAACAGAGTGGTCCTCCTTACAACGCATTTTATGGATGAAGCCGACATTTTAGCTGATTACAAAGCTATTTTATCCAAAGGAAAAGTGCGCTGTGCAGGAAGTTCACTTTTTCTCAAGAATCGCTTTGGAATTGGATATCATTTGAACATGGCTTTAGCAGATGATTGTGACACAGAGCGGTTGACTGAGCTTGTTCAAAGCAAAGTGCAAGGTGCTCAGGCTATACGTCACCACGGAAAAGAAATGGCGTTCGCTCTGCCCATGGAGCAAGTATCGTATTTTCCAGATTTACTCAAAGCTCTGGAAGATAACAATGACAGTTCTGAGGTCTGTGCAGCCCCTTTACTCGGCGTGACCAGCTATGGTGTTGCCATGACAACACTCGAAGAGGTTTTTCTCCAACTGGAAGACACAAGCGAGGTAGAGAGTGAGTCGTCATCAGATGACTTGGAACCTCAGATGGATAAGAGTTCTCAAAATCTGCTAGCACCTACGGATGCCATCAACATTGAAGATGGAGGCTCGAAATACTCAGGGTCTGTCAATGCATTACACAAGGCTGGAGTGGAGCTAAATAATCCAGAACTGAAAGGCAATTCACAGAAACCGGTGTGGAAGGCAAAACAGCAGCTCTTAGCATTACTGAAGATTCGCTGGTTAATGTCAATTCGTACCCCAGCCAAAATATTTTTCCAGATTATCGTTCCCCCATGTCTGTTAATCGCTGGCCTTTCGATATTACGCGCTAACAAGGACAGCACGAAGACAGCAGCCCGGCCAGAACCCCTTCATTTGACGCCTGATTTGTACTTGAAACCTGGTAGCGATGAGGATTATGCGACAAATGCCCTTCTGCAGAACTCTACCAATCGAGCCATGGACTACGTAATGGATTACTTGACTGAGTATGGTGTCGGCACCACGCTGGTGTCTTCTTTAAATGATGTGTTGAGCAGTTCATCTCGAGCATTACAAACCTTGGGATTTAACATTCGAGAGTTTCCAGCGGCCTTCAATTTGTCACAGCCCAGTGATCTTTCTTCAAGCTTTGAGATGCGATACAACGACACAACAGTGCATTCTGTACCTCTTGGTGTCAACATCCTAGGATCTATTCTGCACATGAACGCACTCAAGAGCCAGAATAAAACTCCTTATCCACTGGAGACCACAATCCTTCCATTTCCTGGTCTTAAACCGGAGTGGACTTTTGACTCCACAGCGTACACCTCAATCCTTTTGCTTGGCTTAGCTCTCATTGTTATTCCTGGTGGCTTTGGCATTTTGGTTGTAGGAGAACGCCAGGAGAAGATTCGCCACTTACTGAGGGTGTCTGGAGTGTCATCGTTTGTCTATTGGCTGGAGATCTTCCTCGCTGATGCCATCGTCTTCCTCATTCCAATGGTGCTAATGCTAATACTAGTGCCAGCCTTCCAGCTGCCCTCGCTGTCTCCTCCGCCCGCCATGGGCTGCCTGGTGTTGGCTTTGTTTCTTTACCTGCCCTCGGGAATACTGTTCTCGTACCTTCTCTCGTTCCTGTTCAGTTCGTGGGAGGTAGCTCAGCAAGTTCTGCCAATGGCATTCACTTTTGTGGCTATGATCCCATTTATGGCGGTGTCGCTAGTGGACATGATAGCAAGCCGTGATACAGCTATTATTCTTCACTATGTGTTTGTATTTCTGTTGCCTCCATATCCAGTCTTTGGAGCTTTGTATTATATCGACAGTATATACAGGTACCAGTCTGCTATAGCGTTTTTCACAGCCAATGGTAACTCAGTAGATGTTCAAGTCACTGCAAGTCACTACTTCACATGGACTAAATACAATGGCATTCCCGCCGCATTGATTGCTCCTGTTGTTCATTCAATCCTGTTTGCTGTGCTGATTTACATTCTGGACCAACGAAATGTCGCCGGTACAGCCACGTGTACTTGTATACGCAGTAGCAAAAATAACATTCAAGCTGTCCGAAGTTCAAGCCTTGGGCGAACGGACAGCGTTCGGTCACCAGAACCCGGGGACGAAGACGTGAGAAGAGAGAAAGAAAAACTATTAAGCAGAAATGAAACTTCTATCGAAGAGCCCTCTTACTCCGTTATAATCAAGGGGCTGTGGAAGAGATTCGGCTCAGGCAAGACGGCCAAAACAGTTGTCAAAGACCTGTTTTTTGGTGTTGAGCGAGGAGAAGTTTTCGGACTTCTCGGGCCAAACGGCGCCGGCAAGACAACCTCTCTGAACATGGTAACAGGGGACCTGCCACCGACAAGAGGAAAGGTCTATGTGGCGGGTTATGACATGAGCAGACAGCCACATGAGGCATTCCAGCACATGGGATTTTGCCCACAGGCAGATGCACTCTGGAACATTGTGACACTGCAGGAACACCTGGAGGCTTTTGCTAGGATCCGCGGTGTGCCGTGGGGAGAAGTCCAACGGCTTGTAGAGCACTATATGTCAGCTTTGAGGATTACAGAACATGCCAAGAAAAGGTCCAAAGATCTTTCAGGAGGAACGAAAAGAAAGGTTAGTTTTGCCATGGCAATGCTCGGGGATCCTGAGCTGCTGTTGCTTGATGAGCCCTCTACTGGCATGGACCCTTCTGCCAGACGTTTCTTATGGAACACTATCAGTAAGAATGTGCATGGAAACCGGGGGGCCATTCTCACCACTCACTCCATGGAGGAGGCAGACGCCTTGTGCTCTCGAGTTGGTATCATGGTCAAAGGTCAACTCAAATGTCTTGGCTCAACGCAACATTTAAAGAGCACTTACGGCAGTGGTTATACCTTGGAAATCAAACTCACACAGACCCAGACCCCTGAATCCTCCACGGAAGATTCGATGGAGCGGCTGCACAGTTATGTTGTTGAGTTGCTTCCAGGTGCCACTCGCTCCGAAATGTTCGGCGGAAGAGTTATATACAAGGTCCCAAGAGAAGGCGTTGGAGCGCTGTCAGTAATCTTTAACAAACTAGAAAGAGGTAAGGAAGAGATTGGGATTGAGGAGTACAGCTTCAGTCAGTCGACCCTTGAACAGGTTTTTCTGGAGTTCGCACGCGAACAAGATGACGATCGAACCGGAGCTAAAGACAACCCAGATGACGTCATGGAAAATGGCGGCGATCACGTGTCAGTCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CF82	Cholesterol transporter ABCA5 OS=Rattus norvegicus OX=10116 GN=Abca5 PE=2 SV=1
Q8WWZ7	Cholesterol transporter ABCA5 OS=Homo sapiens OX=9606 GN=ABCA5 PE=1 SV=2
Q8K448	Cholesterol transporter ABCA5 OS=Mus musculus OX=10090 GN=Abca5 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000297 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12698 all species →	ABC2_membrane_3	ABC-2 family transporter protein	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013525 all species →	Domain	ABC-2 type transporter, transmembrane domain	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR026082 all species →	Family	ABC transporter A	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19229 all species →	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005319 all species →	Molecular Function	lipid transporter activity	Interproscan
GO:0006869 all species →	Biological Process	lipid transport	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05648	ABCA5; ATP-binding cassette, subfamily A (ABC1), member 5	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.