Gene detail

Detailed information of evm.model.Ap12.1115 in Astrangia poculata

Genomic Location: Ap12:12065445...12067478
NR annotation: XP_020621255.1, SET and MYND domain-containing protein 4-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.1115

atgtgtgacactggaaatgggctctttcaagagtggtttaaatctatcagcagtattctaaatcagagtggtaatttgaaagagatctcttctcagtttggcttgctaagatcagacgaggagagaatctcatttggactgagtttaacatgtgttcatgatgttatgtcagtggaaccttgcttcaatccaaaatcagcatcagcgtctgctaggttacgtaacgaaggaaacaaactgttccagaaaaatcgatatcacgaagcgctagaggtttattcctgcagtattttgaatgcacctgttgagagccatggccatgaactttctcttgcttttgctaatagatctgcagtgttgtttcatttaagagaataccgtcagtgcttggaagatattgaacaagcattgaggcgtggctatccaaatgaactgagatacaagttgtttgatcgtcaaggaaagtgccttttcggtattgggcaaagcagcaaggccttgaattgctttcaaaaagcaatggagtctttgaatgagtcaaagttagatcacaagaaaaggaaagtttggttgaaagaccttgaaatggaaatttctaaaagccaggaaacgaaaatggatgaaacacacttgatgcaagaagatttgacttcaaataatgaaaatttcccaacaggcgcatttcagttaccacagcttactcataaagaaaatagcaagtttacgtcagcttcttgtgctgtcgacatagcaacatcccctgtcaccggtcgtcatcctgtagcaactcaagacatccatgtgggggatattttggtcattgaaaaaccatttgcatctgttcttttgccagaacatgtagaaactcactgttatcactgtttgaggtggacggctgtcccattgccatgctaccaatgtagcactgtcagatactgcagtgaagcttgcgcaaaacaaagctgggattcatatcactcagttgagtgccagtatcttgacctcatccgtcgagctgggattggcaaaaatggtcaccttgctctaagaataataacaaaggcagggtatgaatttctgaaggacttcagacaagaaattcagcaaggattgtgtgaaagtgacagcagagattcaggttgcagatgtgacggaagttacgtctcatctgattaccttccaatttactgtcttgtgactcattctgaagacagaagtatcggtgatctctttcgccgcacaatgatagctgtgttcttgttgaagacacttcaaggaggtacctttttcggaaagaaaccgtgctctcagaaagaccttgctttcattggcggtctgatattgcggcatcttcagtcaaatccttgtaatgctcatgaagtttcagaacttcaactaaatctcaactctgtagccacttcagaaactagtgaaattgcgtcaggcatatacgccacccttagcctgttcaaccattcatgtgatccaacagttacaagaaacttctacggtgacacctgtgttgtgcgcgctataaagaacattccagtgggacatgagatctctgataactatggcactctaagtgcagtcagtgttaaatctgagaggcatgataaattaaagagtcagtattacttcacttgccagtgtagagcttgcaaagaaaactttcctttgtattcagagataccaaacacttcttctccagtgttcaaatgtgaaaattgccatgcaccactacctgttggaagctgtaaagatagcgcagtgtcggtggcatgcccccagtgtcaatgtacttacaatctgtcagagatgacaatcaccttaaaagattcaacagatttgtttcaacaagccatggatactcttcttctcaaggcagatgtagaaggcactttgtctgtgtttatatctcatctcagacttcttgagaagattgtgtgtcgtccatggaaagattacaataactgccaggaagcaatcaagcagtgttattgcataatgggaaactgtcatgtaatgaaatga

Transcript

evm.model.Ap12.1115

ATGTGTGACACTGGAAATGGGCTCTTTCAAGAGTGGTTTAAATCTATCAGCAGTATTCTAAATCAGAGTGGTAATTTGAAAGAGATCTCTTCTCAGTTTGGCTTGCTAAGATCAGACGAGGAGAGAATCTCATTTGGACTGAGTTTAACATGTGTTCATGATGTTATGTCAGTGGAACCTTGCTTCAATCCAAAATCAGCATCAGCGTCTGCTAGGTTACGTAACGAAGGAAACAAACTGTTCCAGAAAAATCGATATCACGAAGCGCTAGAGGTTTATTCCTGCAGTATTTTGAATGCACCTGTTGAGAGCCATGGCCATGAACTTTCTCTTGCTTTTGCTAATAGATCTGCAGTGTTGTTTCATTTAAGAGAATACCGTCAGTGCTTGGAAGATATTGAACAAGCATTGAGGCGTGGCTATCCAAATGAACTGAGATACAAGTTGTTTGATCGTCAAGGAAAGTGCCTTTTCGGTATTGGGCAAAGCAGCAAGGCCTTGAATTGCTTTCAAAAAGCAATGGAGTCTTTGAATGAGTCAAAGTTAGATCACAAGAAAAGGAAAGTTTGGTTGAAAGACCTTGAAATGGAAATTTCTAAAAGCCAGGAAACGAAAATGGATGAAACACACTTGATGCAAGAAGATTTGACTTCAAATAATGAAAATTTCCCAACAGGCGCATTTCAGTTACCACAGCTTACTCATAAAGAAAATAGCAAGTTTACGTCAGCTTCTTGTGCTGTCGACATAGCAACATCCCCTGTCACCGGTCGTCATCCTGTAGCAACTCAAGACATCCATGTGGGGGATATTTTGGTCATTGAAAAACCATTTGCATCTGTTCTTTTGCCAGAACATGTAGAAACTCACTGTTATCACTGTTTGAGGTGGACGGCTGTCCCATTGCCATGCTACCAATGTAGCACTGTCAGATACTGCAGTGAAGCTTGCGCAAAACAAAGCTGGGATTCATATCACTCAGTTGAGTGCCAGTATCTTGACCTCATCCGTCGAGCTGGGATTGGCAAAAATGGTCACCTTGCTCTAAGAATAATAACAAAGGCAGGGTATGAATTTCTGAAGGACTTCAGACAAGAAATTCAGCAAGGATTGTGTGAAAGTGACAGCAGAGATTCAGGTTGCAGATGTGACGGAAGTTACGTCTCATCTGATTACCTTCCAATTTACTGTCTTGTGACTCATTCTGAAGACAGAAGTATCGGTGATCTCTTTCGCCGCACAATGATAGCTGTGTTCTTGTTGAAGACACTTCAAGGAGGTACCTTTTTCGGAAAGAAACCGTGCTCTCAGAAAGACCTTGCTTTCATTGGCGGTCTGATATTGCGGCATCTTCAGTCAAATCCTTGTAATGCTCATGAAGTTTCAGAACTTCAACTAAATCTCAACTCTGTAGCCACTTCAGAAACTAGTGAAATTGCGTCAGGCATATACGCCACCCTTAGCCTGTTCAACCATTCATGTGATCCAACAGTTACAAGAAACTTCTACGGTGACACCTGTGTTGTGCGCGCTATAAAGAACATTCCAGTGGGACATGAGATCTCTGATAACTATGGCACTCTAAGTGCAGTCAGTGTTAAATCTGAGAGGCATGATAAATTAAAGAGTCAGTATTACTTCACTTGCCAGTGTAGAGCTTGCAAAGAAAACTTTCCTTTGTATTCAGAGATACCAAACACTTCTTCTCCAGTGTTCAAATGTGAAAATTGCCATGCACCACTACCTGTTGGAAGCTGTAAAGATAGCGCAGTGTCGGTGGCATGCCCCCAGTGTCAATGTACTTACAATCTGTCAGAGATGACAATCACCTTAAAAGATTCAACAGATTTGTTTCAACAAGCCATGGATACTCTTCTTCTCAAGGCAGATGTAGAAGGCACTTTGTCTGTGTTTATATCTCATCTCAGACTTCTTGAGAAGATTGTGTGTCGTCCATGGAAAGATTACAATAACTGCCAGGAAGCAATCAAGCAGTGTTATTGCATAATGGGAAACTGTCATGTAATGAAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08C84	Protein-lysine N-methyltransferase SMYD4 OS=Danio rerio OX=7955 GN=smyd4 PE=2 SV=1
Q9H7B4	Histone-lysine N-methyltransferase SMYD3 OS=Homo sapiens OX=9606 GN=SMYD3 PE=1 SV=4
Q9CWR2	Histone-lysine N-methyltransferase SMYD3 OS=Mus musculus OX=10090 GN=Smyd3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005305 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01753 all species →	zf-MYND	MYND finger	Domain	Interproscan
PF00856 all species →	SET	SET domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052097 all species →	Family	SET and MYND domain-containing protein	Interproscan
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR044421 all species →	Domain	SMYD4, SET domain	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46165 all species →	SET AND MYND DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0042826 all species →	Molecular Function	histone deacetylase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24634	SMYD4, ZMYND21; SET and MYND domain-containing protein 4	EC:2.1.1.-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.