Detailed information of evm.model.Ap12.1141 in Astrangia poculata

Genomic Location: Ap12:12224606...12237838
NR annotation: XP_020607920.1, E3 ubiquitin-protein ligase RBBP6-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8IY33MICAL-like protein 2 OS=Homo sapiens OX=9606 GN=MICALL2 PE=1 SV=1
D3ZEN0MICAL-like protein 2 OS=Rattus norvegicus OX=10116 GN=Micall2 PE=1 SV=2
Q3TN34MICAL-like protein 2 OS=Mus musculus OX=10090 GN=Micall2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008221 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00307
all species →		CHCalponin homology (CH) domainDomainInterproscan
PF12130
all species →		bMERB_domBivalent Mical/EHBP Rab binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036872
all species →		Homologous_superfamilyCH domain superfamilyInterproscan
IPR001715
all species →		DomainCalponin homology domainInterproscan
IPR001781
all species →		DomainZinc finger, LIM-typeInterproscan
IPR022735
all species →		DomainbMERB domainInterproscan
IPR050540
all species →		FamilyF-actin Monooxygenase MicalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23167
all species →		CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.1141.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap12.1141 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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