Gene detail

Detailed information of evm.model.Ap12.1147 in Astrangia poculata

Genomic Location: Ap12:12352350...12369964
NR annotation: CAH3106385.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.1147

atggcggaggagagtggcatctacgctgaggatattgtcaagaattcacagggaattgtaggcctggttttagaagatgccgaggaaactactgacgaatcggacagtgaagaagaggcgctcaaaaagggacagatcgtagtgtgttggtacccctccggcaacgaagaaaccctctcgctttccaagttgctgaaactgcgtgccgaagagaactctgaaattctggactggttaaggcgcaaagatgataaatacacctctcctgtcattcaaaatgaaatactggaggcaatagctctatgtatgttgcgcgaaatatccgagaacatacagaacgctactttctttaccatcatggcagacgagacagcggacatttctaacaaagaacaattagttgtgtgcattcgctgggtggatgagaactttgcagttcatgaagacttcataggcatgtatcctgtggagagaaccactgccgaccacatagtagcagtgctgaagaactgtctaattagcatgcatctaagcatcgaaaatgcgcgaggtcaatgctacgatggtgcgtctaccatggctggggaaaaatctggagtagcagcacagataaaggccctgaatagcaaatgcctttacacccattgctatggacatgcgctgaacttggctgtttctgacgcaatcaaatcagtaaagtgcataagcgactctcttgagactgtaagagagatcgcgaagcttgtgaaaaaatcgccccagagaaacacgaagttggataagattagggcgaaacacaaaatgagtcaagaggagtccatgcttttgcccaacaagcacactgataatttgagtcgcgccttgcaaggttcctccatgtcagcggcccaaggacagcaagtagctgaggaagtgtgcaagactctatctagggatagaagtgaagctgcatttgacttgttttggacgaggttgttaaagagaaagcgaagtggatgcagtcgcgagccacagttgccaagaaaacgacgagctcctgcggcaagaagaacatttccgccacatgtatacgcggcaattgatgtgacgacagagtgtatcgcaccagatttaaccagaagggacttcaaggtctaccaaagcatacaggaacttcttctgaaggcggtagcaggcgaaggccatgaagaagagctagctgaaagtgatggccgtgtacgggatactgacctgcagcagtacccagctagaagcccagctgtccctgcttccagaagtagtgcaggcaatggatcactcggaaatgcgcgcaaactcctactgagtgagatttgcacccttgtagcttatgcttgtcatgccagctaccaatgccgtcagcgagcgctccttctccgccttaaagcgagtcaagacctacctgcgttccaccacggagaggacaggctcaaccacctcatgcttctgcatgtccacaaggaattggcagatggtgttgacatggtggaggtcgccaatttgtttgtgggggacaaccagcggcgcaagcagctgtttgggaagttttcaaaaaacgacctgccgatcaaggctacgtttgccttatatactaaagcaactacagtattcaccttggtggtgaatatttacctcgcgctttgccgcttggtatctttaggggtatatccaccacgagctacctccacttcggtcaaattagctgacagatcgcttctacctggtgatgtggtcaagttttccaatgtgcataaaggaacccagaaaggatttgtcagcaatgtagaagttattgccagtgttaaagtccttgtggccaaccagatctttcacaatgtggactgcaaagaactttctcctctacaggatttcattccaggagtgcatgttagcatgggtccatggcttggaattgttactgaggtgtatcgagaagttgtactcaggattaagaacggctccagatgcagcttggagggagaacaatcttctatgttgtacgacctcagtgatcagcgagatgaggtcatctctggtaaccttcaccatacctcagatgaccttcagctgttagggatcctggagtttcttcaggcattttggtgcaagaactacccttatgtactggattctccattctattcagcatctttttatcctgggcagaaagtggctggtcctgctagggccttcaaagaagccagatggatatcaggagttaaaccagtcattcacaaccaagctcagatcaaaggaacagtagaggaggcaagcgtcatagcatgtgatgtagactggcaggtctgtggtgcatgccaacaaggttgccatggagatgaatgtctaaagccacctgatgctacagtgactcaggatcagcttcacagactactggctgtgaaccactttaggcatgcaaaccttcagattggagacaaagcattctatacattgaaagcctgtgatttaatacatgctgctagtggagggaactcatcaaaacagcaaactagcgataatgacaatgcagagggacttgacgagcttgcagagcatgcgtataccagcccaccatctgatagtcagacagaagggtgtggtgtacatgaaggggaaatcccaagcaaggttggaaatgaagcatttacaaatggtgctaaacatgcagttaattctgcgagtgctaatttgagctctgaaggaagcacagagagcttttcaactgaaaatgagtcgaaaaatgccagcgagtcaagttccacaacttccttatgcgatacatatcactgtgcgcatgcagagacatccttgaataaaagagactcggctactggtgggactaatcagatagacatacatgacgatcagcatcatactgcaggctcggattctgcagaggcggatgaagactcggatggtgttgaagttgttataccaaaagttaaaggtgctaatgtcacctctgcgcttaaacatgactcaggttcatcacatgctgtgcgctaccccaccaaacggagaaaaaagcgtttaagaagaaaacggaaagcagcgcctccgttaaaagtgaatgttggtgataaggtatgtgtggaggtcgctcacacttgtacaacagtggatgtgatatggcaggatggatccagacaggacaaagttttatccacagatttgattccagtgtttcacttagatgagttggagtttttccctggagattatgtatctgataaaagagaaaatgctgattcttcaatctacggcgtggttctgaccgctgaccacaagtcacgtttgtgccatgtcaaatggttctcacgtgaaggtcaggaactttcagtggagcgtgacgtcagcgtgtatgacatcacagaacacgcagactttgtgttcagcgcgggagatgtcgtggttcgtgtggctaagaacgacaatgaaaatgaagcagccgtgcaaggagctgagaggccgactccatgtgtagggcaggttactcttgtggacgaggaaggttgtgtgttcatcaagtgggtggacagaacagtttccaaagttaaacctcaagagctgtacaaagttgataccgaggatgatggtcatctgtctgatgatggctccacaatggcctcggatgacgaatgggagacagcaagtggagagagcactgaggaagagtcgcctgctgacatcatggatcacgtgccaaggcgtggctcctcagctggtgacgagagaactgagaatgttgatagtgaagttctgcaggaggccaacaacagaatcaatgaaattatgtcaaataccaatcctgctttcatgacgttcgacaatgttcctgaagaccatatcaactatttctcgacgtttcaggcacaaaatcctggtcgcttcctatcgtgcctgagaaaagaaatggctttactgatgcattcacttccagctggaatcatagttaggggctatgagaatagagtggacattctgagggtcatgattaccggacctgtggacaccccatacgaacatggcctgttcgtatttgacgtgcgcctgccccctgattaccctgcctctccccctgtgttcttttacttgtcccagtgctctggccggttgaacccaaacctctatgaggacggaaaggtttgcgtgagcctgctggggacctggtccgggcgtggaagcgaggtgtggacatcaaagtcgaacgttttgcaagttttggtttcgatacaaggtctaatcttatgcagtgaaccatattacaacgaggccggttatgagaagcaaagaggaacagctgaaggacatgagaacagtcgcctgtacaatgaaatggttttacttaaactggttcagtcaatggagaaacttctcacaagacctccaactggtttggagaaagaaatactacaacactttgctcatcatgggtcgagaatgatacgaaaattcaagcggtggatcgagttatcgcaagagcagtcgactgctgtgcctagctgtgataacgaaggcaccgtcaaggaccatgctacggttggtgaactgaaaccgaaagaggaaagcgaaaatgacgtcatcggttatgacgtaatgcgagcgacagccgtacccggatgtaatagtgagcagattgccgcagttggtaaactggaaccgaaagaagaattaagtgagaatgaacatgcttgtagcaatggagtctctgaaaacggcgcagcgaaggaagtaaaaaatcctgagactacagcggaaagttgtcttcagcccacccctgaaggaaagactttgaacgcggagatcgaaggcgcatgtcgaggtgcaacggcatcggaaaagattgccccggattatcctttgttcccagtctcccgcgggttttgcttaagtcttgggagagcgttggaaagttttcagaaagctttggaaaaagctggactcgcggactgctctgagaaaccataa

Transcript

evm.model.Ap12.1147

ATGGCGGAGGAGAGTGGCATCTACGCTGAGGATATTGTCAAGAATTCACAGGGAATTGTAGGCCTGGTTTTAGAAGATGCCGAGGAAACTACTGACGAATCGGACAGTGAAGAAGAGGCGCTCAAAAAGGGACAGATCGTAGTGTGTTGGTACCCCTCCGGCAACGAAGAAACCCTCTCGCTTTCCAAGTTGCTGAAACTGCGTGCCGAAGAGAACTCTGAAATTCTGGACTGGTTAAGGCGCAAAGATGATAAATACACCTCTCCTGTCATTCAAAATGAAATACTGGAGGCAATAGCTCTATGTATGTTGCGCGAAATATCCGAGAACATACAGAACGCTACTTTCTTTACCATCATGGCAGACGAGACAGCGGACATTTCTAACAAAGAACAATTAGTTGTGTGCATTCGCTGGGTGGATGAGAACTTTGCAGTTCATGAAGACTTCATAGGCATGTATCCTGTGGAGAGAACCACTGCCGACCACATAGTAGCAGTGCTGAAGAACTGTCTAATTAGCATGCATCTAAGCATCGAAAATGCGCGAGGTCAATGCTACGATGGTGCGTCTACCATGGCTGGGGAAAAATCTGGAGTAGCAGCACAGATAAAGGCCCTGAATAGCAAATGCCTTTACACCCATTGCTATGGACATGCGCTGAACTTGGCTGTTTCTGACGCAATCAAATCAGTAAAGTGCATAAGCGACTCTCTTGAGACTGTAAGAGAGATCGCGAAGCTTGTGAAAAAATCGCCCCAGAGAAACACGAAGTTGGATAAGATTAGGGCGAAACACAAAATGAGTCAAGAGGAGTCCATGCTTTTGCCCAACAAGCACACTGATAATTTGAGTCGCGCCTTGCAAGGTTCCTCCATGTCAGCGGCCCAAGGACAGCAAGTAGCTGAGGAAGTGTGCAAGACTCTATCTAGGGATAGAAGTGAAGCTGCATTTGACTTGTTTTGGACGAGGTTGTTAAAGAGAAAGCGAAGTGGATGCAGTCGCGAGCCACAGTTGCCAAGAAAACGACGAGCTCCTGCGGCAAGAAGAACATTTCCGCCACATGTATACGCGGCAATTGATGTGACGACAGAGTGTATCGCACCAGATTTAACCAGAAGGGACTTCAAGGTCTACCAAAGCATACAGGAACTTCTTCTGAAGGCGGTAGCAGGCGAAGGCCATGAAGAAGAGCTAGCTGAAAGTGATGGCCGTGTACGGGATACTGACCTGCAGCAGTACCCAGCTAGAAGCCCAGCTGTCCCTGCTTCCAGAAGTAGTGCAGGCAATGGATCACTCGGAAATGCGCGCAAACTCCTACTGAGTGAGATTTGCACCCTTGTAGCTTATGCTTGTCATGCCAGCTACCAATGCCGTCAGCGAGCGCTCCTTCTCCGCCTTAAAGCGAGTCAAGACCTACCTGCGTTCCACCACGGAGAGGACAGGCTCAACCACCTCATGCTTCTGCATGTCCACAAGGAATTGGCAGATGGTGTTGACATGGTGGAGGTCGCCAATTTGTTTGTGGGGGACAACCAGCGGCGCAAGCAGCTGTTTGGGAAGTTTTCAAAAAACGACCTGCCGATCAAGGCTACGTTTGCCTTATATACTAAAGCAACTACAGTATTCACCTTGGTGGTGAATATTTACCTCGCGCTTTGCCGCTTGGTATCTTTAGGGGTATATCCACCACGAGCTACCTCCACTTCGGTCAAATTAGCTGACAGATCGCTTCTACCTGGTGATGTGGTCAAGTTTTCCAATGTGCATAAAGGAACCCAGAAAGGATTTGTCAGCAATGTAGAAGTTATTGCCAGTGTTAAAGTCCTTGTGGCCAACCAGATCTTTCACAATGTGGACTGCAAAGAACTTTCTCCTCTACAGGATTTCATTCCAGGAGTGCATGTTAGCATGGGTCCATGGCTTGGAATTGTTACTGAGGTGTATCGAGAAGTTGTACTCAGGATTAAGAACGGCTCCAGATGCAGCTTGGAGGGAGAACAATCTTCTATGTTGTACGACCTCAGTGATCAGCGAGATGAGGTCATCTCTGGTAACCTTCACCATACCTCAGATGACCTTCAGCTGTTAGGGATCCTGGAGTTTCTTCAGGCATTTTGGTGCAAGAACTACCCTTATGTACTGGATTCTCCATTCTATTCAGCATCTTTTTATCCTGGGCAGAAAGTGGCTGGTCCTGCTAGGGCCTTCAAAGAAGCCAGATGGATATCAGGAGTTAAACCAGTCATTCACAACCAAGCTCAGATCAAAGGAACAGTAGAGGAGGCAAGCGTCATAGCATGTGATGTAGACTGGCAGGTCTGTGGTGCATGCCAACAAGGTTGCCATGGAGATGAATGTCTAAAGCCACCTGATGCTACAGTGACTCAGGATCAGCTTCACAGACTACTGGCTGTGAACCACTTTAGGCATGCAAACCTTCAGATTGGAGACAAAGCATTCTATACATTGAAAGCCTGTGATTTAATACATGCTGCTAGTGGAGGGAACTCATCAAAACAGCAAACTAGCGATAATGACAATGCAGAGGGACTTGACGAGCTTGCAGAGCATGCGTATACCAGCCCACCATCTGATAGTCAGACAGAAGGGTGTGGTGTACATGAAGGGGAAATCCCAAGCAAGGTTGGAAATGAAGCATTTACAAATGGTGCTAAACATGCAGTTAATTCTGCGAGTGCTAATTTGAGCTCTGAAGGAAGCACAGAGAGCTTTTCAACTGAAAATGAGTCGAAAAATGCCAGCGAGTCAAGTTCCACAACTTCCTTATGCGATACATATCACTGTGCGCATGCAGAGACATCCTTGAATAAAAGAGACTCGGCTACTGGTGGGACTAATCAGATAGACATACATGACGATCAGCATCATACTGCAGGCTCGGATTCTGCAGAGGCGGATGAAGACTCGGATGGTGTTGAAGTTGTTATACCAAAAGTTAAAGGTGCTAATGTCACCTCTGCGCTTAAACATGACTCAGGTTCATCACATGCTGTGCGCTACCCCACCAAACGGAGAAAAAAGCGTTTAAGAAGAAAACGGAAAGCAGCGCCTCCGTTAAAAGTGAATGTTGGTGATAAGGTATGTGTGGAGGTCGCTCACACTTGTACAACAGTGGATGTGATATGGCAGGATGGATCCAGACAGGACAAAGTTTTATCCACAGATTTGATTCCAGTGTTTCACTTAGATGAGTTGGAGTTTTTCCCTGGAGATTATGTATCTGATAAAAGAGAAAATGCTGATTCTTCAATCTACGGCGTGGTTCTGACCGCTGACCACAAGTCACGTTTGTGCCATGTCAAATGGTTCTCACGTGAAGGTCAGGAACTTTCAGTGGAGCGTGACGTCAGCGTGTATGACATCACAGAACACGCAGACTTTGTGTTCAGCGCGGGAGATGTCGTGGTTCGTGTGGCTAAGAACGACAATGAAAATGAAGCAGCCGTGCAAGGAGCTGAGAGGCCGACTCCATGTGTAGGGCAGGTTACTCTTGTGGACGAGGAAGGTTGTGTGTTCATCAAGTGGGTGGACAGAACAGTTTCCAAAGTTAAACCTCAAGAGCTGTACAAAGTTGATACCGAGGATGATGGTCATCTGTCTGATGATGGCTCCACAATGGCCTCGGATGACGAATGGGAGACAGCAAGTGGAGAGAGCACTGAGGAAGAGTCGCCTGCTGACATCATGGATCACGTGCCAAGGCGTGGCTCCTCAGCTGGTGACGAGAGAACTGAGAATGTTGATAGTGAAGTTCTGCAGGAGGCCAACAACAGAATCAATGAAATTATGTCAAATACCAATCCTGCTTTCATGACGTTCGACAATGTTCCTGAAGACCATATCAACTATTTCTCGACGTTTCAGGCACAAAATCCTGGTCGCTTCCTATCGTGCCTGAGAAAAGAAATGGCTTTACTGATGCATTCACTTCCAGCTGGAATCATAGTTAGGGGCTATGAGAATAGAGTGGACATTCTGAGGGTCATGATTACCGGACCTGTGGACACCCCATACGAACATGGCCTGTTCGTATTTGACGTGCGCCTGCCCCCTGATTACCCTGCCTCTCCCCCTGTGTTCTTTTACTTGTCCCAGTGCTCTGGCCGGTTGAACCCAAACCTCTATGAGGACGGAAAGGTTTGCGTGAGCCTGCTGGGGACCTGGTCCGGGCGTGGAAGCGAGGTGTGGACATCAAAGTCGAACGTTTTGCAAGTTTTGGTTTCGATACAAGGTCTAATCTTATGCAGTGAACCATATTACAACGAGGCCGGTTATGAGAAGCAAAGAGGAACAGCTGAAGGACATGAGAACAGTCGCCTGTACAATGAAATGGTTTTACTTAAACTGGTTCAGTCAATGGAGAAACTTCTCACAAGACCTCCAACTGGTTTGGAGAAAGAAATACTACAACACTTTGCTCATCATGGGTCGAGAATGATACGAAAATTCAAGCGGTGGATCGAGTTATCGCAAGAGCAGTCGACTGCTGTGCCTAGCTGTGATAACGAAGGCACCGTCAAGGACCATGCTACGGTTGGTGAACTGAAACCGAAAGAGGAAAGCGAAAATGACGTCATCGGTTATGACGTAATGCGAGCGACAGCCGTACCCGGATGTAATAGTGAGCAGATTGCCGCAGTTGGTAAACTGGAACCGAAAGAAGAATTAAGTGAGAATGAACATGCTTGTAGCAATGGAGTCTCTGAAAACGGCGCAGCGAAGGAAGTAAAAAATCCTGAGACTACAGCGGAAAGTTGTCTTCAGCCCACCCCTGAAGGAAAGACTTTGAACGCGGAGATCGAAGGCGCATGTCGAGGTGCAACGGCATCGGAAAAGATTGCCCCGGATTATCCTTTGTTCCCAGTCTCCCGCGGGTTTTGCTTAAGTCTTGGGAGAGCGTTGGAAAGTTTTCAGAAAGCTTTGGAAAAAGCTGGACTCGCGGACTGCTCTGAGAAACCATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZPJ3	(E3-independent) E2 ubiquitin-conjugating enzyme UBE2O OS=Mus musculus OX=10090 GN=Ube2o PE=1 SV=3
Q9C0C9	(E3-independent) E2 ubiquitin-conjugating enzyme OS=Homo sapiens OX=9606 GN=UBE2O PE=1 SV=3
Q9ZVX1	Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana OX=3702 GN=UBC23 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005860 (this species only)
Ubiquitin family	UBD\|UBC-like\|UBC · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14291 all species →	DUF4371	Domain of unknown function (DUF4371)	Family	Interproscan
PF00179 all species →	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR025398 all species →	Domain	Domain of unknown function DUF4371	Interproscan
IPR000608 all species →	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46116 all species →	(E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0061631 all species →	Molecular Function	ubiquitin conjugating enzyme activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap12.1147.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.