Gene detail

Detailed information of evm.model.Ap12.1162 in Astrangia poculata

Genomic Location: Ap12:12512992...12517142
NR annotation: XP_020607943.1, fascin-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q16658	Fascin OS=Homo sapiens OX=9606 GN=FSCN1 PE=1 SV=3
Q61553	Fascin OS=Mus musculus OX=10090 GN=Fscn1 PE=1 SV=4
O18728	Fascin-2 OS=Bos taurus OX=9913 GN=FSCN2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007762 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06268 all species →	Fascin	Fascin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022768 all species →	Domain	Fascin domain	Interproscan
IPR008999 all species →	Homologous_superfamily	Actin-crosslinking	Interproscan
IPR024703 all species →	Family	Fascin, metazoans	Interproscan
IPR010431 all species →	Family	Fascin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10551 all species →	FASCIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030674 all species →	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0007163 all species →	Biological Process	establishment or maintenance of cell polarity	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0051017 all species →	Biological Process	actin filament bundle assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23551	FSCN1; fascin 1	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.