Gene detail

Detailed information of evm.model.Ap12.1207 in Astrangia poculata

Genomic Location: Ap12:13012911...13041983
NR annotation: XP_027039349.1, small G protein signaling modulator 3-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.1207

atgactgtgaaaaaactcaagaaacaaaagcttgccttgcttagcagcagacagctgctgagaaatgttgtgttctgtttaaacaaagctactctttcagctcccaccctcagtgaagatgaagatgaggatggtggacatgataacacccttgcatgggatgattcctctatccatgttaccagtgggggtactccagttacaggctcctttgtaccagctattggtggtcccttctctgccctcacacccagcatgtggcctcaggatatcctttcaagaattcagcagacagaagatgcaggagatcgtccaacgggacattatgatgaatttggatttatggttgatggagattcagagtttgagcacaaagatcctgaccctggtaattttgtgaccagtgaagatgaagggttgagattaaaatggacggctttcttagagtttacacagaatcaagatgttggtgatatgacttgggacaaggtatctccaagctttcctcattcagacaagttacgagagcttgtttatcttggaattcctcacagcatgagagcaccaatctggatgcgaatttcaggagccctacaaaagaaaatcagcagtgatttcacttacaagcaaattgtccgggcaagtgctgatgagaattctctgactgccaagcaaattgaaaaggatctgttgcgaaccatgcccaacaatgcatgtttttcatcgcaaacaagcacaggattgttacgactcagaaggatcctaaggtcactagcttggctgtacactgatattggatactgtcaaggaatgggcatgattgtggcatccttgttgctctttgtagaggaggaagatgccttttggttgatgtgtaccatagtggaagaccttgttcccacatcttattactcaagcacattgattggtgtacaggctgatcagagagtgctgcggcagctgattgtcagttatcttccaccaatggatgataagttaaaggagcatgacatagagttgtcgctaataactctccactggttcttgacagcatttgctagtgttgtacatacaaagatccttttaagaatttgggatatcttcttttatgagggttcggtgactttgttcagaataacacttggtatgctgaaaatgaaggaagatgtgattttaaaattggataattcagcgcagatttttaacaccctgtcagacatacctggcgatgtcactgatgcagagcagctgttagaggctgcaaacaaggcatctgcctcgctgactgatgtgatactggagacacacagaaagaagcacatggctttccttatggccgaccttggagttctggtggataaggagtctggaaaacagataactagagatcgacttcaaaagagaacaatagctccaccaagaacattcttcagtttactcttcggaaaaggtggtgtttcattgcacaaggctaaaaacatcagacagacagaactagtggccgatttaagggaagctattcttcaaatagccagacattttgacgctgtggatcctaaaaagggtctggaaattgattattcaatggagagtcatgcaaaagaccatgaaagatttattaacgtagccagaaatcggcggagaagagctaaggctttgttagactttgaaagacacgatgacgatgagctgggatttcggaaaaatgacattgtcacgataatttcacagaaggacgaacactgctgggtgggtgaactcaacggtttaagaggttggtttcctgccaaatttgtagagattctagatgaaagaagtaaagagtattccaccgcaggagacgattctgtgtctgaaactgttacggatctcgtcagaggcgggttatgcccagccctgaagtcaatatttctgcacggcatgagaaagccgtccattttaggaggaccttgtcatccctggctctttatggaagaggcaagccaacgtgaagtggacagggattttcagtcagtttattctcggctggtgctgtgtaagacgtttagattggacgaagatgggaaagttctctcaccggaggaaattctttacagagcggtgcagtcaataaatatgagccacgatgcagcaaattcacagatggatatcaagttccgctctctaatctgctacggcctcaacgaacaatgtcttcatctgtggctggaaacgttgtgtgcgtgtgaagatatcgtcggcaagtggtaccatccttggtcgtttcttcggagtccaggttgggtacaaatcaagtgcgaactcaggacccttgcatctttcgcattcaatctgaatatcgactgggagcttactggtgaacgtaagactgttatagacgggtacggcgatcaaaagaagatacaggaggttacccaacctatgaaggatggagtgcgtgacatgctggtgaaacatcacttgttcagctgggatctctaa

Transcript

evm.model.Ap12.1207

ATGACTGTGAAAAAACTCAAGAAACAAAAGCTTGCCTTGCTTAGCAGCAGACAGCTGCTGAGAAATGTTGTGTTCTGTTTAAACAAAGCTACTCTTTCAGCTCCCACCCTCAGTGAAGATGAAGATGAGGATGGTGGACATGATAACACCCTTGCATGGGATGATTCCTCTATCCATGTTACCAGTGGGGGTACTCCAGTTACAGGCTCCTTTGTACCAGCTATTGGTGGTCCCTTCTCTGCCCTCACACCCAGCATGTGGCCTCAGGATATCCTTTCAAGAATTCAGCAGACAGAAGATGCAGGAGATCGTCCAACGGGACATTATGATGAATTTGGATTTATGGTTGATGGAGATTCAGAGTTTGAGCACAAAGATCCTGACCCTGGTAATTTTGTGACCAGTGAAGATGAAGGGTTGAGATTAAAATGGACGGCTTTCTTAGAGTTTACACAGAATCAAGATGTTGGTGATATGACTTGGGACAAGGTATCTCCAAGCTTTCCTCATTCAGACAAGTTACGAGAGCTTGTTTATCTTGGAATTCCTCACAGCATGAGAGCACCAATCTGGATGCGAATTTCAGGAGCCCTACAAAAGAAAATCAGCAGTGATTTCACTTACAAGCAAATTGTCCGGGCAAGTGCTGATGAGAATTCTCTGACTGCCAAGCAAATTGAAAAGGATCTGTTGCGAACCATGCCCAACAATGCATGTTTTTCATCGCAAACAAGCACAGGATTGTTACGACTCAGAAGGATCCTAAGGTCACTAGCTTGGCTGTACACTGATATTGGATACTGTCAAGGAATGGGCATGATTGTGGCATCCTTGTTGCTCTTTGTAGAGGAGGAAGATGCCTTTTGGTTGATGTGTACCATAGTGGAAGACCTTGTTCCCACATCTTATTACTCAAGCACATTGATTGGTGTACAGGCTGATCAGAGAGTGCTGCGGCAGCTGATTGTCAGTTATCTTCCACCAATGGATGATAAGTTAAAGGAGCATGACATAGAGTTGTCGCTAATAACTCTCCACTGGTTCTTGACAGCATTTGCTAGTGTTGTACATACAAAGATCCTTTTAAGAATTTGGGATATCTTCTTTTATGAGGGTTCGGTGACTTTGTTCAGAATAACACTTGGTATGCTGAAAATGAAGGAAGATGTGATTTTAAAATTGGATAATTCAGCGCAGATTTTTAACACCCTGTCAGACATACCTGGCGATGTCACTGATGCAGAGCAGCTGTTAGAGGCTGCAAACAAGGCATCTGCCTCGCTGACTGATGTGATACTGGAGACACACAGAAAGAAGCACATGGCTTTCCTTATGGCCGACCTTGGAGTTCTGGTGGATAAGGAGTCTGGAAAACAGATAACTAGAGATCGACTTCAAAAGAGAACAATAGCTCCACCAAGAACATTCTTCAGTTTACTCTTCGGAAAAGGTGGTGTTTCATTGCACAAGGCTAAAAACATCAGACAGACAGAACTAGTGGCCGATTTAAGGGAAGCTATTCTTCAAATAGCCAGACATTTTGACGCTGTGGATCCTAAAAAGGGTCTGGAAATTGATTATTCAATGGAGAGTCATGCAAAAGACCATGAAAGATTTATTAACGTAGCCAGAAATCGGCGGAGAAGAGCTAAGGCTTTGTTAGACTTTGAAAGACACGATGACGATGAGCTGGGATTTCGGAAAAATGACATTGTCACGATAATTTCACAGAAGGACGAACACTGCTGGGTGGGTGAACTCAACGGTTTAAGAGGTTGGTTTCCTGCCAAATTTGTAGAGATTCTAGATGAAAGAAGTAAAGAGTATTCCACCGCAGGAGACGATTCTGTGTCTGAAACTGTTACGGATCTCGTCAGAGGCGGGTTATGCCCAGCCCTGAAGTCAATATTTCTGCACGGCATGAGAAAGCCGTCCATTTTAGGAGGACCTTGTCATCCCTGGCTCTTTATGGAAGAGGCAAGCCAACGTGAAGTGGACAGGGATTTTCAGTCAGTTTATTCTCGGCTGGTGCTGTGTAAGACGTTTAGATTGGACGAAGATGGGAAAGTTCTCTCACCGGAGGAAATTCTTTACAGAGCGGTGCAGTCAATAAATATGAGCCACGATGCAGCAAATTCACAGATGGATATCAAGTTCCGCTCTCTAATCTGCTACGGCCTCAACGAACAATGTCTTCATCTGTGGCTGGAAACGTTGTGTGCGTGTGAAGATATCGTCGGCAAGTGGTACCATCCTTGGTCGTTTCTTCGGAGTCCAGGTTGGGTACAAATCAAGTGCGAACTCAGGACCCTTGCATCTTTCGCATTCAATCTGAATATCGACTGGGAGCTTACTGGTGAACGTAAGACTGTTATAGACGGGTACGGCGATCAAAAGAAGATACAGGAGGTTACCCAACCTATGAAGGATGGAGTGCGTGACATGCTGGTGAAACATCACTTGTTCAGCTGGGATCTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VCZ6	Small G protein signaling modulator 3 OS=Mus musculus OX=10090 GN=Sgsm3 PE=1 SV=1
A6H8I2	Small G protein signaling modulator 3 homolog OS=Xenopus laevis OX=8355 GN=sgsm3 PE=2 SV=1
Q96HU1	Small G protein signaling modulator 3 OS=Homo sapiens OX=9606 GN=SGSM3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002777 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF02759 all species →	RUN	RUN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035833 all species →	Domain	SGSM3, SH3 domain	Interproscan
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR037213 all species →	Homologous_superfamily	RUN domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR004012 all species →	Domain	RUN domain	Interproscan
IPR050302 all species →	Family	Rab GTPase-activating TBC domain-containing protein	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47219 all species →	RAB GTPASE-ACTIVATING PROTEIN 1-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20176	SGSM3, MAP; small G protein signaling modulator 3	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.