Detailed information of evm.model.Ap12.1219 in Astrangia poculata

Genomic Location: Ap12:13182446...13187112
NR annotation: XP_020607752.1, uncharacterized protein LOC110046409 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P21187Polyadenylate-binding protein OS=Drosophila melanogaster OX=7227 GN=pAbp PE=1 SV=3
Q6GR16Embryonic polyadenylate-binding protein B OS=Xenopus laevis OX=8355 GN=epabp-b PE=2 SV=1
F1QB54Polyadenylate-binding protein 1A OS=Danio rerio OX=7955 GN=pabpc1a PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008766 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00658
all species →		PABPPoly-adenylate binding protein, unique domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036053
all species →		Homologous_superfamilyPABC (PABP) domainInterproscan
IPR002004
all species →		DomainPolyadenylate-binding protein/Hyperplastic disc proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46276
all species →		E3 UBIQUITIN-PROTEIN LIGASE UBR5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0000209
all species →		Biological Processprotein polyubiquitinationInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0034450
all species →		Molecular Functionubiquitin-ubiquitin ligase activityInterproscan
GO:0090263
all species →		Biological Processpositive regulation of canonical Wnt signaling pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap12.1219.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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