Gene detail

Detailed information of evm.model.Ap12.1273 in Astrangia poculata

Genomic Location: Ap12:13590703...13615312
NR annotation: KAJ7362094.1, hypothetical protein OS493_013185 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap12.1273

atgtccccgttacatttagcggcttggtcgggaaaggttgaagtagctcggctgctagtggagtctggagctgaagtagatacatgttgtgaaaatggagatacacctcttattttagcttgtcaacatggcaactctgatgtggcagaagtgcttttggacaggaagtgtctctccctgactgtaaacaacaatggagagactgctctggaccttgcctgcagatatggacatgtacatgctgttgaactgctactctcatccagagaggtaaggagtgctttagcaaatggcgaagcccgtaaaacagatcctccattacacttagcctctaagacaggccacatggaaatagtcagaatgttattagaagctgatgcagacattaatcaggtgacaagtaatggtacatgtttacatgaagctgctctctatggtaaaactgaggtggttaagttcctctttgattggggcattgatgcaaacatcaggaatgacgagggacacacagcacttgacgtggagggaaaccagagaacctggagagaaacccttggggcaagggcgagagctaataatgcacttatcccacatgatgccatgtccaggattcaaccttgggccacattggttggagacgcggcagatgcagataccactgtatacgccaaagctgtgagggatcacttcaatatgctggattcaacagcactttcattcaaggccggagaaacaataatcgttctggaacaacaccaaaatgaaagatggaaaggaaaagttatcagtggagataaagaaaaagttggatacttccctggaaacttcgtcaggttaaccacgccaaggaaaggctcttctgccaagaagtcgccaaagcttaaggaagctggtgtactaccggtgggctcgtaccagatggtcgcattaccttcagagccaccttcaggttttcagagaaattctcctcgactaagtagttttggtaaaaaggtacctcgccgtggaggcgatgaagatggggaacagagccccagccctctaccgaaaaaggccctctttgagccagttttacctccaaagggactcaaagccaaaaaaggctcagtcaaactcgcatccggacccggcctccagtacgtggaggtggaggttgacaaagcgccgatgtctcctcctcaggcatctaatgcggcagcgaatcaaacaaacagcaaaacgcaatacgctgaagttcgtttaccagggccaaatggaaatgtggaagaggtcgatgaatgtgaagatcttccacagctgcctcagaaagagaataagaagccttctgtttcaaacgagatggaagatatttgggtgcgtaacccagccaatccaccaccttcgctaccgcctaaagcacgggcgccgtctaaagacgacacccccaccgttgtccccgagtctagtctgtcatcttctaaatctggaagacctcctgcggcccttccacaagacatacatcccgcgggacaatccagtcccgagggtcagacaagtccctcgagtaaaacgggactcgaagttaccgagaagccctcgcaacgggtcgcaagtcccgagttgtcgagaaaaggatacgaagatatgaatcttagttcggtatctggagagagagcaatgcctcctccctctcctgaagatatatggaaaccgcaaccttggaatgtaagagagcaaccgaaacagcagctagcttacgagaacgttcagctgcctaacagaggaaagccgacgagtgacatgcaaagtatgatcatctctgatgtcgaccaaccgggggagggtgaggatggttatgttattgtgaacacaccatcgtcaaaaacaactgatgccagaggctacgaaaatgtcacgccaggtgctgtcacgccagtgaaatataactgggacaacatttcgaatgatgtcaattatgtacccatgacgggaggtgtttctgctggctcagcgcaaactgccaggacaagtaatcaagctccagagcaaggcaataaggagacgaatttaacagaggaaagtaaagatggaatggattacgagatgatgaagagctgtgcagtgtctgtcaaccatcagtatgtcaatattaacagacatggagacgcgggtaatccctcggaagctgcgggtcaaatcccgctaaagatgcgagattataacgcgttgtttgactggctggagaaatttaaattgactatctacatcgataattttgtaaaaggaggttttgacatgaccagtgtacttggaatcactgcagaggatttgacggctataaacgtgacgaaaacttttcacaggaaaaagatcctatcagaatcagccaaactggaaggaacgatggtatttccgaaagaaaaaccgaaagatatcatgacgtggctacgtctgattggtctagagcaatacatacccgagttcttagacggcgggttcgatgacatggacttccttcaagacatgacgtcggaagacctggtagcgattggagtcacaaaaccaggtcatcagagaaagatttggatggctgtgaatgctttgaaagaagcagacgaaaatgaaaacgtcctggaaagcgtagaggaggaggaattaacgccacaggaaaggaaaggttatttagagacttgtttagatggagaagattccggcgtgtccacagatgaagttgaaccgtccgaattgatctcggaaagcgctcgaacggaggacgatcaaatggagttttctcgcgctgcgcttgccgcgagagaaaacgttaatgaagagccttttgtcgaggattcttcgtcggcagaatccgaaattcctgaaacaacaacgcagcaggtttttaaagaggaaataccgcatgaaaacgcagatcaagaacagcaaaagacttctgttccgcaagatctgtgctctgaagttccacagacgtctggcgatggggtcaatctctccgcccagcggactgattcactagaaaaagacaatgataaaaaggaagcggacacttcgttaagattatataaggaaaatactatctcattacctgatagtgaagacgatgaacctcctccccgccctccccctccaatggaggatattgacctgccacgtcacgtggctgactctaatcaaaatgaaatcaattacaatgatccaaaaatgcccgttagggacctggtgtcaaaggagaacgatagaacacgtaccttctcgctggactctacctttcaaagacccaagaaacctgccccaccagctgtcaagcctaaaagctttaagaaggctccaccgcctaaggtgccgcccaagcctcgaaaagcagcatctttcacggcgggctacatcgagaggagctcgggcgaggaaagctgtggagacaggtcaccgacaaaatccctgtctcctgtagacagacgcagcagcactggttccggtccctactgctggccgtcgcctcccggcgttcgacaaaccggaaacggaaatggaagtgtgcgatcgcgaagcagtagcgccagcagtcacagctcagtggactcattgatcgaagagtttgaagagagaaagaagagttttgaaagacctggcagaaagataagcgctccagagcgactgaacacctcttatgagtatcgtggaggagtaagaaagagccaggcggacgcggcgagagctgacggtgaacttgatgaacaaattaaacagattctgagacatcgctccagagaagatctgtcagaaacatcaccaacagaatcctctgtgccatcgtcaactgtgccgcacattgacattgaagcggagtcttcggaagcactgaagaaggagcaagaattggctgaagacctaatgaaagacattaacagcatgctgagtgatttttccactgagctagactccatgttcgagtga

Transcript

evm.model.Ap12.1273

GGATGTCCCCGTTACATTTAGCGGCTTGGTCGGGAAAGGTTGAAGTAGCTCGGCTGCTAGTGGAGTCTGGAGCTGAAGTAGATACATGTTGTGAAAATGGAGATACACCTCTTATTTTAGCTTGTCAACATGGCAACTCTGATGTGGCAGAAGTGCTTTTGGACAGGAAGTGTCTCTCCCTGACTGTAAACAACAATGGAGAGACTGCTCTGGACCTTGCCTGCAGATATGGACATGTACATGCTGTTGAACTGCTACTCTCATCCAGAGAGGTAAGGAGTGCTTTAGCAAATGGCGAAGCCCGTAAAACAGATCCTCCATTACACTTAGCCTCTAAGACAGGCCACATGGAAATAGTCAGAATGTTATTAGAAGCTGATGCAGACATTAATCAGGTGACAAGTAATGGTACATGTTTACATGAAGCTGCTCTCTATGGTAAAACTGAGGTGGTTAAGTTCCTCTTTGATTGGGGCATTGATGCAAACATCAGGAATGACGAGGGACACACAGCACTTGACGTGGAGGGAAACCAGAGAACCTGGAGAGAAACCCTTGGGGCAAGGGCGAGAGCTAATAATGCACTTATCCCACATGATGCCATGTCCAGGATTCAACCTTGGGCCACATTGGTTGGAGACGCGGCAGATGCAGATACCACTGTATACGCCAAAGCTGTGAGGGATCACTTCAATATGCTGGATTCAACAGCACTTTCATTCAAGGCCGGAGAAACAATAATCGTTCTGGAACAACACCAAAATGAAAGATGGAAAGGAAAAGTTATCAGTGGAGATAAAGAAAAAGTTGGATACTTCCCTGGAAACTTCGTCAGGTTAACCACGCCAAGGAAAGGCTCTTCTGCCAAGAAGTCGCCAAAGCTTAAGGAAGCTGGTGTACTACCGGTGGGCTCGTACCAGATGGTCGCATTACCTTCAGAGCCACCTTCAGGTTTTCAGAGAAATTCTCCTCGACTAAGTAGTTTTGGTAAAAAGGTACCTCGCCGTGGAGGCGATGAAGATGGGGAACAGAGCCCCAGCCCTCTACCGAAAAAGGCCCTCTTTGAGCCAGTTTTACCTCCAAAGGGACTCAAAGCCAAAAAAGGCTCAGTCAAACTCGCATCCGGACCCGGCCTCCAGTACGTGGAGGTGGAGGTTGACAAAGCGCCGATGTCTCCTCCTCAGGCATCTAATGCGGCAGCGAATCAAACAAACAGCAAAACGCAATACGCTGAAGTTCGTTTACCAGGGCCAAATGGAAATGTGGAAGAGGTCGATGAATGTGAAGATCTTCCACAGCTGCCTCAGAAAGAGAATAAGAAGCCTTCTGTTTCAAACGAGATGGAAGATATTTGGGTGCGTAACCCAGCCAATCCACCACCTTCGCTACCGCCTAAAGCACGGGCGCCGTCTAAAGACGACACCCCCACCGTTGTCCCCGAGTCTAGTCTGTCATCTTCTAAATCTGGAAGACCTCCTGCGGCCCTTCCACAAGACATACATCCCGCGGGACAATCCAGTCCCGAGGGTCAGACAAGTCCCTCGAGTAAAACGGGACTCGAAGTTACCGAGAAGCCCTCGCAACGGGTCGCAAGTCCCGAGTTGTCGAGAAAAGGATACGAAGATATGAATCTTAGTTCGGTATCTGGAGAGAGAGCAATGCCTCCTCCCTCTCCTGAAGATATATGGAAACCGCAACCTTGGAATGTAAGAGAGCAACCGAAACAGCAGCTAGCTTACGAGAACGTTCAGCTGCCTAACAGAGGAAAGCCGACGAGTGACATGCAAAGTATGATCATCTCTGATGTCGACCAACCGGGGGAGGGTGAGGATGGTTATGTTATTGTGAACACACCATCGTCAAAAACAACTGATGCCAGAGGCTACGAAAATGTCACGCCAGGTGCTGTCACGCCAGTGAAATATAACTGGGACAACATTTCGAATGATGTCAATTATGTACCCATGACGGGAGGTGTTTCTGCTGGCTCAGCGCAAACTGCCAGGACAAGTAATCAAGCTCCAGAGCAAGGCAATAAGGAGACGAATTTAACAGAGGAAAGTAAAGATGGAATGGATTACGAGATGATGAAGAGCTGTGCAGTGTCTGTCAACCATCAGTATGTCAATATTAACAGACATGGAGACGCGGGTAATCCCTCGGAAGCTGCGGGTCAAATCCCGCTAAAGATGCGAGATTATAACGCGTTGTTTGACTGGCTGGAGAAATTTAAATTGACTATCTACATCGATAATTTTGTAAAAGGAGGTTTTGACATGACCAGTGTACTTGGAATCACTGCAGAGGATTTGACGGCTATAAACGTGACGAAAACTTTTCACAGGAAAAAGATCCTATCAGAATCAGCCAAACTGGAAGGAACGATGGTATTTCCGAAAGAAAAACCGAAAGATATCATGACGTGGCTACGTCTGATTGGTCTAGAGCAATACATACCCGAGTTCTTAGACGGCGGGTTCGATGACATGGACTTCCTTCAAGACATGACGTCGGAAGACCTGGTAGCGATTGGAGTCACAAAACCAGGTCATCAGAGAAAGATTTGGATGGCTGTGAATGCTTTGAAAGAAGCAGACGAAAATGAAAACGTCCTGGAAAGCGTAGAGGAGGAGGAATTAACGCCACAGGAAAGGAAAGGTTATTTAGAGACTTGTTTAGATGGAGAAGATTCCGGCGTGTCCACAGATGAAGTTGAACCGTCCGAATTGATCTCGGAAAGCGCTCGAACGGAGGACGATCAAATGGAGTTTTCTCGCGCTGCGCTTGCCGCGAGAGAAAACGTTAATGAAGAGCCTTTTGTCGAGGATTCTTCGTCGGCAGAATCCGAAATTCCTGAAACAACAACGCAGCAGGTTTTTAAAGAGGAAATACCGCATGAAAACGCAGATCAAGAACAGCAAAAGACTTCTGTTCCGCAAGATCTGTGCTCTGAAGTTCCACAGACGTCTGGCGATGGGGTCAATCTCTCCGCCCAGCGGACTGATTCACTAGAAAAAGACAATGATAAAAAGGAAGCGGACACTTCGTTAAGATTATATAAGGAAAATACTATCTCATTACCTGATAGTGAAGACGATGAACCTCCTCCCCGCCCTCCCCCTCCAATGGAGGATATTGACCTGCCACGTCACGTGGCTGACTCTAATCAAAATGAAATCAATTACAATGATCCAAAAATGCCCGTTAGGGACCTGGTGTCAAAGGAGAACGATAGAACACGTACCTTCTCGCTGGACTCTACCTTTCAAAGACCCAAGAAACCTGCCCCACCAGCTGTCAAGCCTAAAAGCTTTAAGAAGGCTCCACCGCCTAAGGTGCCGCCCAAGCCTCGAAAAGCAGCATCTTTCACGGCGGGCTACATCGAGAGGAGCTCGGGCGAGGAAAGCTGTGGAGACAGGTCACCGACAAAATCCCTGTCTCCTGTAGACAGACGCAGCAGCACTGGTTCCGGTCCCTACTGCTGGCCGTCGCCTCCCGGCGTTCGACAAACCGGAAACGGAAATGGAAGTGTGCGATCGCGAAGCAGTAGCGCCAGCAGTCACAGCTCAGTGGACTCATTGATCGAAGAGTTTGAAGAGAGAAAGAAGAGTTTTGAAAGACCTGGCAGAAAGATAAGCGCTCCAGAGCGACTGAACACCTCTTATGAGTATCGTGGAGGAGTAAGAAAGAGCCAGGCGGACGCGGCGAGAGCTGACGGTGAACTTGATGAACAAATTAAACAGATTCTGAGACATCGCTCCAGAGAAGATCTGTCAGAAACATCACCAACAGAATCCTCTGTGCCATCGTCAACTGTGCCGCACATTGACATTGAAGCGGAGTCTTCGGAAGCACTGAAGAAGGAGCAAGAATTGGCTGAAGACCTAATGAAAGACATTAACAGCATGCTGAGTGATTTTTCCACTGAGCTAGACTCCATGTTCGAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VHK2	Caskin-1 OS=Rattus norvegicus OX=10116 GN=Caskin1 PE=1 SV=1
Q8WXD9	Caskin-1 OS=Homo sapiens OX=9606 GN=CASKIN1 PE=1 SV=1
Q6P9K8	Caskin-1 OS=Mus musculus OX=10090 GN=Caskin1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002758 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR033635 all species →	Family	Ankyrin repeat and SAM domain-containing protein 1/Caskin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24174 all species →	ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21952	CASKIN, ANKS5; CASK-interacting protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.