Genomic Location: Ap12:13590703...13615312
NR annotation: KAJ7362094.1, hypothetical protein OS493_013185 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap12.1273.1.5f15e477 |
| Transcript |
| evm.model.Ap12.1273.1.5f15e477 |
| Protein |
| evm.model.Ap12.1273.1.5f15e477 |
| UniProt accession | Description |
|---|---|
| Q8VHK2 | Caskin-1 OS=Rattus norvegicus OX=10116 GN=Caskin1 PE=1 SV=1 |
| Q8WXD9 | Caskin-1 OS=Homo sapiens OX=9606 GN=CASKIN1 PE=1 SV=1 |
| Q6P9K8 | Caskin-1 OS=Mus musculus OX=10090 GN=Caskin1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002758 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00536 all species → | SAM_1 | SAM domain (Sterile alpha motif) | Domain | Interproscan |
| PF12796 all species → | Ank_2 | Ankyrin repeats (3 copies) | Repeat | Interproscan |
| PF07653 all species → | SH3_2 | Variant SH3 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002110 all species → | Repeat | Ankyrin repeat | Interproscan |
| IPR001660 all species → | Domain | Sterile alpha motif domain | Interproscan |
| IPR001452 all species → | Domain | SH3 domain | Interproscan |
| IPR033635 all species → | Family | Ankyrin repeat and SAM domain-containing protein 1/Caskin | Interproscan |
| IPR013761 all species → | Homologous_superfamily | Sterile alpha motif/pointed domain superfamily | Interproscan |
| IPR036770 all species → | Homologous_superfamily | Ankyrin repeat-containing domain superfamily | Interproscan |
| IPR036028 all species → | Homologous_superfamily | SH3-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24174 all species → | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K21952 | CASKIN, ANKS5; CASK-interacting protein | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of evm.model.Ap12.1273.1.5f15e477 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
